Results 121 - 140 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26477 | 3' | -59.7 | NC_005357.1 | + | 24742 | 0.67 | 0.359546 |
Target: 5'- cGCCUGCGCgGCCUcgacccaugcugucGgAAUGaCCuGCCa -3' miRNA: 3'- uCGGAUGCGgCGGA--------------UgUUGC-GGcCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24551 | 0.69 | 0.25045 |
Target: 5'- uGGUCgcgcaGCGCgGCgaugGCGAgGCCGGCCa -3' miRNA: 3'- -UCGGa----UGCGgCGga--UGUUgCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24486 | 0.67 | 0.379353 |
Target: 5'- uGGCCUGCGCCaggaaGUCguaGGgGCUGGCg -3' miRNA: 3'- -UCGGAUGCGG-----CGGaugUUgCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24139 | 0.68 | 0.313641 |
Target: 5'- cAGCCgGCuGCgCGCCUGgccCAGCGCCucgacGGCUg -3' miRNA: 3'- -UCGGaUG-CG-GCGGAU---GUUGCGG-----CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 24032 | 0.67 | 0.345377 |
Target: 5'- cGCCgACgugGCCGCCacCGGCGCCaucggcaaGGCCa -3' miRNA: 3'- uCGGaUG---CGGCGGauGUUGCGG--------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23965 | 0.74 | 0.12844 |
Target: 5'- cGGCCgACGCCGCCg---GCGCCGcGaCCg -3' miRNA: 3'- -UCGGaUGCGGCGGauguUGCGGC-C-GG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23942 | 0.75 | 0.108711 |
Target: 5'- uGGUCagGCGCCGCCcgGCGAgGUCGGCa -3' miRNA: 3'- -UCGGa-UGCGGCGGa-UGUUgCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23868 | 0.66 | 0.415496 |
Target: 5'- cGCgaGCGCgGCCUccacCGACGUgaucgacuuCGGCCa -3' miRNA: 3'- uCGgaUGCGgCGGAu---GUUGCG---------GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23773 | 0.66 | 0.419226 |
Target: 5'- gGGCCgaUGCGCCGCggCUACGAagauggauuccguggUGCCgaucaacuGGCCu -3' miRNA: 3'- -UCGG--AUGCGGCG--GAUGUU---------------GCGG--------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23623 | 0.69 | 0.263523 |
Target: 5'- -uCCUGCGCCGCCagaucaccaACAAgGUggCGGCCu -3' miRNA: 3'- ucGGAUGCGGCGGa--------UGUUgCG--GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23417 | 0.77 | 0.067192 |
Target: 5'- gAGC--GCGCCGgUcagUGCGACGCCGGCCg -3' miRNA: 3'- -UCGgaUGCGGCgG---AUGUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23380 | 0.67 | 0.345377 |
Target: 5'- cGCUgaucgACGCCGCCgGCGGcCGCUaccagGGCUa -3' miRNA: 3'- uCGGa----UGCGGCGGaUGUU-GCGG-----CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23353 | 0.68 | 0.291321 |
Target: 5'- cGGCCU-CGCCGCCgaugaAC-ACGgUGGCg -3' miRNA: 3'- -UCGGAuGCGGCGGa----UGuUGCgGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23284 | 0.68 | 0.329227 |
Target: 5'- cGGCgUGCGCCacgaauGCCUGuuuGCgGCCGGCa -3' miRNA: 3'- -UCGgAUGCGG------CGGAUgu-UG-CGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23198 | 0.72 | 0.162958 |
Target: 5'- gGGCCUgACGCCGCgCUuCAACaGCCuguccgcggagaacGGCCa -3' miRNA: 3'- -UCGGA-UGCGGCG-GAuGUUG-CGG--------------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23043 | 0.69 | 0.277144 |
Target: 5'- -aCCUACGCCGaaguggACAAgGCCcuGGCCg -3' miRNA: 3'- ucGGAUGCGGCgga---UGUUgCGG--CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23003 | 0.67 | 0.353663 |
Target: 5'- cGCCUG-GUCgGCCUGCugcuGCGCCuGCUg -3' miRNA: 3'- uCGGAUgCGG-CGGAUGu---UGCGGcCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 22652 | 0.7 | 0.236693 |
Target: 5'- cGGCCUGgcaaucagugaaGaCCGCCU-CGugGCCGGCa -3' miRNA: 3'- -UCGGAUg-----------C-GGCGGAuGUugCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 22236 | 0.66 | 0.41364 |
Target: 5'- cGGCCcugguugucgGCCGCgaugGCGuauuCGCCGGCCg -3' miRNA: 3'- -UCGGaug-------CGGCGga--UGUu---GCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 21811 | 0.74 | 0.118193 |
Target: 5'- aGGCCgACaCCGaCCUGCGACGCC-GCCu -3' miRNA: 3'- -UCGGaUGcGGC-GGAUGUUGCGGcCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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