miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 23417 0.77 0.067192
Target:  5'- gAGC--GCGCCGgUcagUGCGACGCCGGCCg -3'
miRNA:   3'- -UCGgaUGCGGCgG---AUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 7223 0.77 0.067192
Target:  5'- cAGCauCUGCGCCGCgCUcacccucgGCGAUGUCGGCCg -3'
miRNA:   3'- -UCG--GAUGCGGCG-GA--------UGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 27824 0.78 0.063452
Target:  5'- cGCgcGCGCUGCCcGCGgugGCGCCGGCCg -3'
miRNA:   3'- uCGgaUGCGGCGGaUGU---UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34674 0.79 0.051884
Target:  5'- gAGCCUGgauuccuuCGUCGCCaACAGCaaGCCGGCCg -3'
miRNA:   3'- -UCGGAU--------GCGGCGGaUGUUG--CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11146 0.82 0.032624
Target:  5'- cGGCCUGCugcuggGCCGCCUGCGcacguugcguGCGCUGGUCg -3'
miRNA:   3'- -UCGGAUG------CGGCGGAUGU----------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37585 0.75 0.109933
Target:  5'- aAGCUg--GCCGCUUuccgugaauucgacgACGGCGCCGGCCc -3'
miRNA:   3'- -UCGGaugCGGCGGA---------------UGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8386 0.74 0.11495
Target:  5'- cGGCCUcGCGCUGgCUGCGuagccaGUCGGCCa -3'
miRNA:   3'- -UCGGA-UGCGGCgGAUGUug----CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 28524 0.72 0.17339
Target:  5'- uGCCgGCGCUGCUUguugaacggcACGAccuugcggcCGCCGGCCa -3'
miRNA:   3'- uCGGaUGCGGCGGA----------UGUU---------GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 3539 0.72 0.168783
Target:  5'- uGCCguuccagGCGCCGCCgaauagcGCAGCaGCgGGCUg -3'
miRNA:   3'- uCGGa------UGCGGCGGa------UGUUG-CGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 40541 0.72 0.168783
Target:  5'- uGCUguuCGCCcacCCggcCAGCGCCGGCCa -3'
miRNA:   3'- uCGGau-GCGGc--GGau-GUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 2141 0.72 0.164286
Target:  5'- cAGCCggucaaccGCGCCGCCgUAC-ACGuuGGCg -3'
miRNA:   3'- -UCGGa-------UGCGGCGG-AUGuUGCggCCGg -5'
26477 3' -59.7 NC_005357.1 + 37294 0.73 0.147359
Target:  5'- cGCCUGCGCgGCacguUGCAguucaacgGCGCCaGCCg -3'
miRNA:   3'- uCGGAUGCGgCGg---AUGU--------UGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 11997 0.73 0.147359
Target:  5'- uGGCCUuuuccACGUCgGCCaGCAGCGC-GGCCg -3'
miRNA:   3'- -UCGGA-----UGCGG-CGGaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 19924 0.73 0.143382
Target:  5'- cAGCUUGuCGCCGCCgaACuccuUGUCGGCCg -3'
miRNA:   3'- -UCGGAU-GCGGCGGa-UGuu--GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 35954 0.74 0.12844
Target:  5'- gGGCCUGCGCgGCgUGCAguuccuGCGCgaCGGCg -3'
miRNA:   3'- -UCGGAUGCGgCGgAUGU------UGCG--GCCGg -5'
26477 3' -59.7 NC_005357.1 + 21179 0.74 0.124936
Target:  5'- cGGCCUgcuGCGCgGCCUGC--UGCUGGUCu -3'
miRNA:   3'- -UCGGA---UGCGgCGGAUGuuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14900 0.74 0.124936
Target:  5'- gGGUCUGCGCgGCgauCUGCuGCugGCCGGCCu -3'
miRNA:   3'- -UCGGAUGCGgCG---GAUGuUG--CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 730 0.74 0.121521
Target:  5'- gGGCg-GCuuUGCCgACAACGCCGGCCa -3'
miRNA:   3'- -UCGgaUGcgGCGGaUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34714 0.74 0.118193
Target:  5'- gAGCgUGCGCUGCaguucaucgGCAA-GCCGGCCg -3'
miRNA:   3'- -UCGgAUGCGGCGga-------UGUUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 20190 0.74 0.11495
Target:  5'- cGCCUuguCGUCGCCcucggucuugGCAGCGCCcgcGGCCg -3'
miRNA:   3'- uCGGAu--GCGGCGGa---------UGUUGCGG---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.