miRNA display CGI


Results 61 - 80 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 14900 0.74 0.124936
Target:  5'- gGGUCUGCGCgGCgauCUGCuGCugGCCGGCCu -3'
miRNA:   3'- -UCGGAUGCGgCG---GAUGuUG--CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 21179 0.74 0.124936
Target:  5'- cGGCCUgcuGCGCgGCCUGC--UGCUGGUCu -3'
miRNA:   3'- -UCGGA---UGCGgCGGAUGuuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 17368 0.71 0.182941
Target:  5'- cGCCUGCGacagguaUGCCUGCAucGCGCCGacGCa -3'
miRNA:   3'- uCGGAUGCg------GCGGAUGU--UGCGGC--CGg -5'
26477 3' -59.7 NC_005357.1 + 37640 0.71 0.182941
Target:  5'- uGGCCUACGCCaaaGCCUucGCggUGUC-GCCu -3'
miRNA:   3'- -UCGGAUGCGG---CGGA--UGuuGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 813 0.71 0.187889
Target:  5'- cGCC-GCGCCcaGCCcuUGCcgAACGUCGGCCa -3'
miRNA:   3'- uCGGaUGCGG--CGG--AUG--UUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 20759 0.71 0.187889
Target:  5'- aGGCgCUGCGCCGCgCUcgACucauCGCgCGGCUg -3'
miRNA:   3'- -UCG-GAUGCGGCG-GA--UGuu--GCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 30444 0.71 0.187889
Target:  5'- gGGCCU-CGCCcugaaucaguuGCCagGgGGCGCCGGUCa -3'
miRNA:   3'- -UCGGAuGCGG-----------CGGa-UgUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 12201 0.71 0.189901
Target:  5'- cGGCCcGCGCUGCCUgccccuggucgggacGCAGCacaCCGGCa -3'
miRNA:   3'- -UCGGaUGCGGCGGA---------------UGUUGc--GGCCGg -5'
26477 3' -59.7 NC_005357.1 + 32118 0.71 0.191423
Target:  5'- uGGCCgcUGCCGaCCU-CGACGCCcccgaaucccucaaGGCCg -3'
miRNA:   3'- -UCGGauGCGGC-GGAuGUUGCGG--------------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 33914 0.71 0.191423
Target:  5'- cGCCUACGCCacgGCCcaccgcaucUGCAuuucuucauuacucGCGUCGGCUg -3'
miRNA:   3'- uCGGAUGCGG---CGG---------AUGU--------------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11492 0.71 0.182453
Target:  5'- cGCCUGCGacaCCGCaaaggGCAGCGCCugcgcuggcgugaGGCCc -3'
miRNA:   3'- uCGGAUGC---GGCGga---UGUUGCGG-------------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 38057 0.72 0.17339
Target:  5'- cGCCUggcuGCGCaucCGCCUGC--CGuCCGGCCg -3'
miRNA:   3'- uCGGA----UGCG---GCGGAUGuuGC-GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 35954 0.74 0.12844
Target:  5'- gGGCCUGCGCgGCgUGCAguuccuGCGCgaCGGCg -3'
miRNA:   3'- -UCGGAUGCGgCGgAUGU------UGCG--GCCGg -5'
26477 3' -59.7 NC_005357.1 + 19924 0.73 0.143382
Target:  5'- cAGCUUGuCGCCGCCgaACuccuUGUCGGCCg -3'
miRNA:   3'- -UCGGAU-GCGGCGGa-UGuu--GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11997 0.73 0.147359
Target:  5'- uGGCCUuuuccACGUCgGCCaGCAGCGC-GGCCg -3'
miRNA:   3'- -UCGGA-----UGCGG-CGGaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37294 0.73 0.147359
Target:  5'- cGCCUGCGCgGCacguUGCAguucaacgGCGCCaGCCg -3'
miRNA:   3'- uCGGAUGCGgCGg---AUGU--------UGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 2141 0.72 0.164286
Target:  5'- cAGCCggucaaccGCGCCGCCgUAC-ACGuuGGCg -3'
miRNA:   3'- -UCGGa-------UGCGGCGG-AUGuUGCggCCGg -5'
26477 3' -59.7 NC_005357.1 + 40541 0.72 0.168783
Target:  5'- uGCUguuCGCCcacCCggcCAGCGCCGGCCa -3'
miRNA:   3'- uCGGau-GCGGc--GGau-GUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 3539 0.72 0.168783
Target:  5'- uGCCguuccagGCGCCGCCgaauagcGCAGCaGCgGGCUg -3'
miRNA:   3'- uCGGa------UGCGGCGGa------UGUUG-CGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 28524 0.72 0.17339
Target:  5'- uGCCgGCGCUGCUUguugaacggcACGAccuugcggcCGCCGGCCa -3'
miRNA:   3'- uCGGaUGCGGCGGA----------UGUU---------GCGGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.