Results 101 - 120 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26477 | 3' | -59.7 | NC_005357.1 | + | 8830 | 0.7 | 0.23185 |
Target: 5'- gGGUCgg-GCCaGCC-GCAACGCgGGCCa -3' miRNA: 3'- -UCGGaugCGG-CGGaUGUUGCGgCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 14531 | 0.7 | 0.237917 |
Target: 5'- cAGCC-ACGUCGCCg---GCGCCGGaCa -3' miRNA: 3'- -UCGGaUGCGGCGGauguUGCGGCCgG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32307 | 0.7 | 0.237917 |
Target: 5'- cGaCCUcauCGCCGCCauCAAgGCCGGCg -3' miRNA: 3'- uC-GGAu--GCGGCGGauGUUgCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 38387 | 0.7 | 0.237917 |
Target: 5'- uGGCCUGcCGCuCGCC-GCG--GCCGGCUu -3' miRNA: 3'- -UCGGAU-GCG-GCGGaUGUugCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25824 | 0.69 | 0.25045 |
Target: 5'- uGCaCcGgGCCGCCguuGGCGCCGGUCa -3' miRNA: 3'- uCG-GaUgCGGCGGaugUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 36228 | 0.71 | 0.208874 |
Target: 5'- gAGCCgcGCGCCGUcaccugcaaacgCUGCGGCaagaCCGGCCu -3' miRNA: 3'- -UCGGa-UGCGGCG------------GAUGUUGc---GGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 13053 | 0.71 | 0.203445 |
Target: 5'- uGCUugagUGCgGCCGUCUGCAuguugaauugGCGCuCGGCCu -3' miRNA: 3'- uCGG----AUG-CGGCGGAUGU----------UGCG-GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 17368 | 0.71 | 0.182941 |
Target: 5'- cGCCUGCGacagguaUGCCUGCAucGCGCCGacGCa -3' miRNA: 3'- uCGGAUGCg------GCGGAUGU--UGCGGC--CGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 37640 | 0.71 | 0.182941 |
Target: 5'- uGGCCUACGCCaaaGCCUucGCggUGUC-GCCu -3' miRNA: 3'- -UCGGAUGCGG---CGGA--UGuuGCGGcCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 813 | 0.71 | 0.187889 |
Target: 5'- cGCC-GCGCCcaGCCcuUGCcgAACGUCGGCCa -3' miRNA: 3'- uCGGaUGCGG--CGG--AUG--UUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 20759 | 0.71 | 0.187889 |
Target: 5'- aGGCgCUGCGCCGCgCUcgACucauCGCgCGGCUg -3' miRNA: 3'- -UCG-GAUGCGGCG-GA--UGuu--GCG-GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 30444 | 0.71 | 0.187889 |
Target: 5'- gGGCCU-CGCCcugaaucaguuGCCagGgGGCGCCGGUCa -3' miRNA: 3'- -UCGGAuGCGG-----------CGGa-UgUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 12201 | 0.71 | 0.189901 |
Target: 5'- cGGCCcGCGCUGCCUgccccuggucgggacGCAGCacaCCGGCa -3' miRNA: 3'- -UCGGaUGCGGCGGA---------------UGUUGc--GGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32118 | 0.71 | 0.191423 |
Target: 5'- uGGCCgcUGCCGaCCU-CGACGCCcccgaaucccucaaGGCCg -3' miRNA: 3'- -UCGGauGCGGC-GGAuGUUGCGG--------------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 33914 | 0.71 | 0.191423 |
Target: 5'- cGCCUACGCCacgGCCcaccgcaucUGCAuuucuucauuacucGCGUCGGCUg -3' miRNA: 3'- uCGGAUGCGG---CGG---------AUGU--------------UGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 26158 | 0.71 | 0.192955 |
Target: 5'- cGGCU--CGCCGUCUGCGAUG-CGGUCg -3' miRNA: 3'- -UCGGauGCGGCGGAUGUUGCgGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 6231 | 0.71 | 0.19814 |
Target: 5'- uGCCUucgGCCaggGCCUGC-ACGCCGGUa -3' miRNA: 3'- uCGGAug-CGG---CGGAUGuUGCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32358 | 0.71 | 0.19814 |
Target: 5'- cGCUgcgguCGCCGCCga-GGCcCCGGCCg -3' miRNA: 3'- uCGGau---GCGGCGGaugUUGcGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32541 | 0.71 | 0.19814 |
Target: 5'- cGGCCaggAUGCUGCCgccgGCGAUGCCGcuCCg -3' miRNA: 3'- -UCGGa--UGCGGCGGa---UGUUGCGGCc-GG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 39681 | 0.71 | 0.203445 |
Target: 5'- uGGUCggcACGCC-CgaGCAGCGCCgGGCCg -3' miRNA: 3'- -UCGGa--UGCGGcGgaUGUUGCGG-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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