Results 121 - 140 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26477 | 3' | -59.7 | NC_005357.1 | + | 30444 | 0.71 | 0.187889 |
Target: 5'- gGGCCU-CGCCcugaaucaguuGCCagGgGGCGCCGGUCa -3' miRNA: 3'- -UCGGAuGCGG-----------CGGa-UgUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 12201 | 0.71 | 0.189901 |
Target: 5'- cGGCCcGCGCUGCCUgccccuggucgggacGCAGCacaCCGGCa -3' miRNA: 3'- -UCGGaUGCGGCGGA---------------UGUUGc--GGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32118 | 0.71 | 0.191423 |
Target: 5'- uGGCCgcUGCCGaCCU-CGACGCCcccgaaucccucaaGGCCg -3' miRNA: 3'- -UCGGauGCGGC-GGAuGUUGCGG--------------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 33914 | 0.71 | 0.191423 |
Target: 5'- cGCCUACGCCacgGCCcaccgcaucUGCAuuucuucauuacucGCGUCGGCUg -3' miRNA: 3'- uCGGAUGCGG---CGG---------AUGU--------------UGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 26158 | 0.71 | 0.192955 |
Target: 5'- cGGCU--CGCCGUCUGCGAUG-CGGUCg -3' miRNA: 3'- -UCGGauGCGGCGGAUGUUGCgGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 6231 | 0.71 | 0.19814 |
Target: 5'- uGCCUucgGCCaggGCCUGC-ACGCCGGUa -3' miRNA: 3'- uCGGAug-CGG---CGGAUGuUGCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32358 | 0.71 | 0.19814 |
Target: 5'- cGCUgcgguCGCCGCCga-GGCcCCGGCCg -3' miRNA: 3'- uCGGau---GCGGCGGaugUUGcGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32541 | 0.71 | 0.19814 |
Target: 5'- cGGCCaggAUGCUGCCgccgGCGAUGCCGcuCCg -3' miRNA: 3'- -UCGGa--UGCGGCGGa---UGUUGCGGCc-GG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 39681 | 0.71 | 0.203445 |
Target: 5'- uGGUCggcACGCC-CgaGCAGCGCCgGGCCg -3' miRNA: 3'- -UCGGa--UGCGGcGgaUGUUGCGG-CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 27700 | 0.7 | 0.214427 |
Target: 5'- aGGCCgcGCGCCGgCaGCGGCucgccGCCGGUCa -3' miRNA: 3'- -UCGGa-UGCGGCgGaUGUUG-----CGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25529 | 0.7 | 0.214427 |
Target: 5'- cGGUUUugcCGCCGCCgGCAGCGCCcccguaGCCg -3' miRNA: 3'- -UCGGAu--GCGGCGGaUGUUGCGGc-----CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 18263 | 0.7 | 0.214427 |
Target: 5'- cGaCCUGCGCCGagaACu-UGCCGGCCg -3' miRNA: 3'- uC-GGAUGCGGCggaUGuuGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 40662 | 0.71 | 0.208874 |
Target: 5'- cGGCCcgACG-CGCCagGCGcAgGCCGGCCa -3' miRNA: 3'- -UCGGa-UGCgGCGGa-UGU-UgCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 36228 | 0.71 | 0.208874 |
Target: 5'- gAGCCgcGCGCCGUcaccugcaaacgCUGCGGCaagaCCGGCCu -3' miRNA: 3'- -UCGGa-UGCGGCG------------GAUGUUGc---GGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 13053 | 0.71 | 0.203445 |
Target: 5'- uGCUugagUGCgGCCGUCUGCAuguugaauugGCGCuCGGCCu -3' miRNA: 3'- uCGG----AUG-CGGCGGAUGU----------UGCG-GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 14228 | 0.65 | 0.432436 |
Target: 5'- uGGCCgaccuggacaagGCGCCGCacCUGCuggGCGUgGGCa -3' miRNA: 3'- -UCGGa-----------UGCGGCG--GAUGu--UGCGgCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 33852 | 0.79 | 0.051884 |
Target: 5'- aGGCCgcacGCGCgGCCUACGACGCCcaggaugaGGUCg -3' miRNA: 3'- -UCGGa---UGCGgCGGAUGUUGCGG--------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 14996 | 0.78 | 0.059914 |
Target: 5'- gGGCCUGCgGCCGCCggGCGcgguGCGCCaGGCg -3' miRNA: 3'- -UCGGAUG-CGGCGGa-UGU----UGCGG-CCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 27557 | 0.78 | 0.060955 |
Target: 5'- aAGCCgggcaacuuaaagGCGCCcaGCgUGCGGCGCUGGCCg -3' miRNA: 3'- -UCGGa------------UGCGG--CGgAUGUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 40196 | 0.77 | 0.071143 |
Target: 5'- cGGCCacGCGCCGCCUGCuGCGCgUGGUg -3' miRNA: 3'- -UCGGa-UGCGGCGGAUGuUGCG-GCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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