miRNA display CGI


Results 81 - 100 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 18584 0.7 0.225913
Target:  5'- gGGUUU-CGCCuGCCUGCuggucACGCCGGUg -3'
miRNA:   3'- -UCGGAuGCGG-CGGAUGu----UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 4571 0.69 0.25045
Target:  5'- cGCCgagGCGCUGCUcGguGCGCCaGGCg -3'
miRNA:   3'- uCGGa--UGCGGCGGaUguUGCGG-CCGg -5'
26477 3' -59.7 NC_005357.1 + 14143 0.69 0.263523
Target:  5'- aAGuUCUGCGCCGUgUccCAGCGCgCGGUCa -3'
miRNA:   3'- -UC-GGAUGCGGCGgAu-GUUGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 13884 0.69 0.266203
Target:  5'- uGGCCgGCgGCCGCaaggUcgugccguucaacaaGCAGCGCCGGCa -3'
miRNA:   3'- -UCGGaUG-CGGCGg---A---------------UGUUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 4177 0.69 0.270264
Target:  5'- uAGCCg--GCCGCCUcgaugGCGggcAUGuuGGCCg -3'
miRNA:   3'- -UCGGaugCGGCGGA-----UGU---UGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37539 0.69 0.284163
Target:  5'- uGGCCgaaaacgAgGCCGCCgucGCcGCGCUGGgCa -3'
miRNA:   3'- -UCGGa------UgCGGCGGa--UGuUGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 33405 0.68 0.295684
Target:  5'- cGUCUggugacgaacugguGCGCCGCCUGCuggaAGCGCCcccgcgcGGCg -3'
miRNA:   3'- uCGGA--------------UGCGGCGGAUG----UUGCGG-------CCGg -5'
26477 3' -59.7 NC_005357.1 + 40961 0.72 0.167423
Target:  5'- cGGCCUGCcaggagGCCGCCgACcGCGCCGucaagaagguguuuGCCa -3'
miRNA:   3'- -UCGGAUG------CGGCGGaUGuUGCGGC--------------CGG- -5'
26477 3' -59.7 NC_005357.1 + 17057 0.73 0.151435
Target:  5'- gGGCUUcUGgCGCCUGCccgGugGCCGGCUa -3'
miRNA:   3'- -UCGGAuGCgGCGGAUG---UugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 23965 0.74 0.12844
Target:  5'- cGGCCgACGCCGCCg---GCGCCGcGaCCg -3'
miRNA:   3'- -UCGGaUGCGGCGGauguUGCGGC-C-GG- -5'
26477 3' -59.7 NC_005357.1 + 33559 0.68 0.30606
Target:  5'- uGCCcGCGcCCGCUUcgugGCGaccgaggccaacGCGCUGGCCc -3'
miRNA:   3'- uCGGaUGC-GGCGGA----UGU------------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14083 0.68 0.321363
Target:  5'- cGC--GCGCUGCCcgACGAgGCCaaGGCCa -3'
miRNA:   3'- uCGgaUGCGGCGGa-UGUUgCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 32546 0.68 0.321363
Target:  5'- cGCCacGCGCCugGCCgagaaGCAgcGCGCCGGUg -3'
miRNA:   3'- uCGGa-UGCGG--CGGa----UGU--UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 18495 0.67 0.337231
Target:  5'- gGGCgUGCGCCugaccaucacGCCU---AUGCCGGCa -3'
miRNA:   3'- -UCGgAUGCGG----------CGGAuguUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 165 0.67 0.345377
Target:  5'- uGCCcaaGCUGCCgcgcGCAgaAUGCCGGCg -3'
miRNA:   3'- uCGGaugCGGCGGa---UGU--UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 25128 0.77 0.071143
Target:  5'- uGCCggaauggAUGCgCGCCcGCGGCGCCGGCUu -3'
miRNA:   3'- uCGGa------UGCG-GCGGaUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 15176 0.75 0.094478
Target:  5'- uGCCUcgGCCaagaGCCUGgGGCGCCGGCUg -3'
miRNA:   3'- uCGGAugCGG----CGGAUgUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 38556 0.75 0.108711
Target:  5'- cGGCa-GCGCgGCCUACAGCGaCGGCg -3'
miRNA:   3'- -UCGgaUGCGgCGGAUGUUGCgGCCGg -5'
26477 3' -59.7 NC_005357.1 + 29032 0.74 0.11495
Target:  5'- cGCaacgAUGCCGCCUACAaccgcGCGCUGGgCa -3'
miRNA:   3'- uCGga--UGCGGCGGAUGU-----UGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 13380 0.74 0.124936
Target:  5'- uGGCCUACgaGCCGCCgguggguauCGAC-CUGGCCg -3'
miRNA:   3'- -UCGGAUG--CGGCGGau-------GUUGcGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.