miRNA display CGI


Results 121 - 140 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 41923 0.7 0.214427
Target:  5'- cGCCUGCaaGCCGCC-GCGGCGCaguaugcuGCCg -3'
miRNA:   3'- uCGGAUG--CGGCGGaUGUUGCGgc------CGG- -5'
26477 3' -59.7 NC_005357.1 + 8960 0.69 0.25045
Target:  5'- uGGCCgugcCGCgauaGCCaGCGugGCCGuGCCg -3'
miRNA:   3'- -UCGGau--GCGg---CGGaUGUugCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 34750 0.69 0.253021
Target:  5'- cGGCCgcagauCGCCGCCaaagaacggcgcgugUACGGCaaggaGCCGGCg -3'
miRNA:   3'- -UCGGau----GCGGCGG---------------AUGUUG-----CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 32090 0.69 0.263523
Target:  5'- aGGCacACGCCGCagcgACGGCuaCGGCCu -3'
miRNA:   3'- -UCGgaUGCGGCGga--UGUUGcgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8463 0.69 0.270264
Target:  5'- cGUCgAgGUgGCCUGCGAUGCCGcaGCCg -3'
miRNA:   3'- uCGGaUgCGgCGGAUGUUGCGGC--CGG- -5'
26477 3' -59.7 NC_005357.1 + 23043 0.69 0.277144
Target:  5'- -aCCUACGCCGaaguggACAAgGCCcuGGCCg -3'
miRNA:   3'- ucGGAUGCGGCgga---UGUUgCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 37539 0.69 0.284163
Target:  5'- uGGCCgaaaacgAgGCCGCCgucGCcGCGCUGGgCa -3'
miRNA:   3'- -UCGGa------UgCGGCGGa--UGuUGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 13432 0.68 0.29862
Target:  5'- cGCCUACGUCGauaacgaggaCUACGACaCCuGGCUg -3'
miRNA:   3'- uCGGAUGCGGCg---------GAUGUUGcGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 39975 0.74 0.12738
Target:  5'- cGCCUugugcaacaucgugGCGCCGaUCUuCGAgGCCGGCCu -3'
miRNA:   3'- uCGGA--------------UGCGGC-GGAuGUUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33895 0.68 0.29862
Target:  5'- cGGCCUGCGauaCCUggGCAAguuCGCCGGCg -3'
miRNA:   3'- -UCGGAUGCggcGGA--UGUU---GCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 28011 0.66 0.424857
Target:  5'- uGCCgcagGCG-CGCCUgGCGACGCCcaGCUu -3'
miRNA:   3'- uCGGa---UGCgGCGGA-UGUUGCGGc-CGG- -5'
26477 3' -59.7 NC_005357.1 + 36047 0.69 0.256918
Target:  5'- cGCCgcgGCgGCCGaCCUGguguaaccCAGCGCCccGGCCu -3'
miRNA:   3'- uCGGa--UG-CGGC-GGAU--------GUUGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 24551 0.69 0.25045
Target:  5'- uGGUCgcgcaGCGCgGCgaugGCGAgGCCGGCCa -3'
miRNA:   3'- -UCGGa----UGCGgCGga--UGUUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34993 0.69 0.25045
Target:  5'- aGGCCgaaGCCGaaCUGCug-GCCGGCCa -3'
miRNA:   3'- -UCGGaugCGGCg-GAUGuugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 10659 0.66 0.396257
Target:  5'- cGGCgUgaaacGCGCCGCCguguccaguUGCGucuugacggcagcGCGCaCGGCCu -3'
miRNA:   3'- -UCGgA-----UGCGGCGG---------AUGU-------------UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 22236 0.66 0.41364
Target:  5'- cGGCCcugguugucgGCCGCgaugGCGuauuCGCCGGCCg -3'
miRNA:   3'- -UCGGaug-------CGGCGga--UGUu---GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 32454 0.66 0.406263
Target:  5'- -cCCUACGCCcCCUACugccgagguGGgGgCGGCCg -3'
miRNA:   3'- ucGGAUGCGGcGGAUG---------UUgCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14819 0.66 0.406263
Target:  5'- cGGCg-GCGCUGCCUucgcccagguCGAUGCCguuggcGGCCa -3'
miRNA:   3'- -UCGgaUGCGGCGGAu---------GUUGCGG------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 42223 0.66 0.3873
Target:  5'- -aCCUACGCCaCCaugaUGCugauggcggggauGACGCCGGCa -3'
miRNA:   3'- ucGGAUGCGGcGG----AUG-------------UUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 11492 0.71 0.182453
Target:  5'- cGCCUGCGacaCCGCaaaggGCAGCGCCugcgcuggcgugaGGCCc -3'
miRNA:   3'- uCGGAUGC---GGCGga---UGUUGCGG-------------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.