Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26477 | 5' | -51.2 | NC_005357.1 | + | 26286 | 0.66 | 0.881576 |
Target: 5'- cGCGcAUCGcGCGC-GAuGGAUGCCAucaacGGa -3' miRNA: 3'- -CGU-UAGC-CGCGaCUuUCUGCGGUu----CC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 14038 | 0.66 | 0.87355 |
Target: 5'- cGCGccgcCGGCGUcGAAcuGGAacaccuCGCCAAGGa -3' miRNA: 3'- -CGUua--GCCGCGaCUU--UCU------GCGGUUCC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 4103 | 0.66 | 0.87355 |
Target: 5'- gGUGggCGGCGCUGAAuu-CGUCGcGGu -3' miRNA: 3'- -CGUuaGCCGCGACUUucuGCGGUuCC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 22313 | 0.66 | 0.87355 |
Target: 5'- gGCAuUCGacgacgguGUGCUGGgcgccuuuuccgAAGuCGCCAAGGa -3' miRNA: 3'- -CGUuAGC--------CGCGACU------------UUCuGCGGUUCC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 16439 | 0.66 | 0.87355 |
Target: 5'- cGCcggCGGCGUUGAAcacGGCGUCGuagaucGGGg -3' miRNA: 3'- -CGuuaGCCGCGACUUu--CUGCGGU------UCC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 26875 | 0.66 | 0.87355 |
Target: 5'- ----aCGGCGCcauUGAccuGGACGUgGAGGc -3' miRNA: 3'- cguuaGCCGCG---ACUu--UCUGCGgUUCC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 14212 | 0.66 | 0.865252 |
Target: 5'- cGCGuggucGUCGGCGUggccgaccUGGAcaAGGCGCCGcaccugcuGGGc -3' miRNA: 3'- -CGU-----UAGCCGCG--------ACUU--UCUGCGGU--------UCC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 30478 | 0.66 | 0.865252 |
Target: 5'- gGUcAUCGcGUcaccuGCUGAAAGuCGUCGAGGu -3' miRNA: 3'- -CGuUAGC-CG-----CGACUUUCuGCGGUUCC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 34371 | 0.66 | 0.865252 |
Target: 5'- aGCGAccUgGGCGCgcgucaUGGAcGGCGgCAAGGa -3' miRNA: 3'- -CGUU--AgCCGCG------ACUUuCUGCgGUUCC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 34495 | 0.66 | 0.85669 |
Target: 5'- gGCcg-UGGCG-UGAAgguGGACGCCGAGc -3' miRNA: 3'- -CGuuaGCCGCgACUU---UCUGCGGUUCc -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 19324 | 0.66 | 0.85669 |
Target: 5'- uCGAUgaaGGCGCggucuucgGAcAGGCGCCAGGcGg -3' miRNA: 3'- cGUUAg--CCGCGa-------CUuUCUGCGGUUC-C- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 25365 | 0.66 | 0.838807 |
Target: 5'- cGCcuUCGuGCGCgaggUGAAGGAUucgGCCAAGa -3' miRNA: 3'- -CGuuAGC-CGCG----ACUUUCUG---CGGUUCc -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 15273 | 0.66 | 0.838807 |
Target: 5'- cGCGugCGGCGCgUGggGGACuUCGAGu -3' miRNA: 3'- -CGUuaGCCGCG-ACuuUCUGcGGUUCc -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 14053 | 0.66 | 0.838807 |
Target: 5'- cGCGAaagccCGGCGCUGGgcGucguUGCCuAGGg -3' miRNA: 3'- -CGUUa----GCCGCGACUuuCu---GCGGuUCC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 10279 | 0.66 | 0.838807 |
Target: 5'- gGCAAggucgaguUCGGCcUUGAGggauucggGGGCGUCGAGGu -3' miRNA: 3'- -CGUU--------AGCCGcGACUU--------UCUGCGGUUCC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 27581 | 0.66 | 0.838807 |
Target: 5'- aGCGugCGGCGCUGGc---CGCCAAcGGc -3' miRNA: 3'- -CGUuaGCCGCGACUuucuGCGGUU-CC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 27235 | 0.67 | 0.829506 |
Target: 5'- cGCcAUCGGCGCauagGAGAaaAUGCCAugucAGGa -3' miRNA: 3'- -CGuUAGCCGCGa---CUUUc-UGCGGU----UCC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 30170 | 0.67 | 0.828563 |
Target: 5'- gGCAGUUGGCGCcagucggUGAAggccaugaaguAGcCGCCGGGc -3' miRNA: 3'- -CGUUAGCCGCG-------ACUU-----------UCuGCGGUUCc -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 18274 | 0.67 | 0.819978 |
Target: 5'- cGCAgccGUCgaGGCGCUGGGccAGGCGCgCAGccGGc -3' miRNA: 3'- -CGU---UAG--CCGCGACUU--UCUGCG-GUU--CC- -5' |
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26477 | 5' | -51.2 | NC_005357.1 | + | 26613 | 0.67 | 0.819978 |
Target: 5'- -gAGUCcuGCGCggu-GGugGCCGAGGg -3' miRNA: 3'- cgUUAGc-CGCGacuuUCugCGGUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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