miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 5' -51.2 NC_005357.1 + 26286 0.66 0.881576
Target:  5'- cGCGcAUCGcGCGC-GAuGGAUGCCAucaacGGa -3'
miRNA:   3'- -CGU-UAGC-CGCGaCUuUCUGCGGUu----CC- -5'
26477 5' -51.2 NC_005357.1 + 14038 0.66 0.87355
Target:  5'- cGCGccgcCGGCGUcGAAcuGGAacaccuCGCCAAGGa -3'
miRNA:   3'- -CGUua--GCCGCGaCUU--UCU------GCGGUUCC- -5'
26477 5' -51.2 NC_005357.1 + 16439 0.66 0.87355
Target:  5'- cGCcggCGGCGUUGAAcacGGCGUCGuagaucGGGg -3'
miRNA:   3'- -CGuuaGCCGCGACUUu--CUGCGGU------UCC- -5'
26477 5' -51.2 NC_005357.1 + 26875 0.66 0.87355
Target:  5'- ----aCGGCGCcauUGAccuGGACGUgGAGGc -3'
miRNA:   3'- cguuaGCCGCG---ACUu--UCUGCGgUUCC- -5'
26477 5' -51.2 NC_005357.1 + 22313 0.66 0.87355
Target:  5'- gGCAuUCGacgacgguGUGCUGGgcgccuuuuccgAAGuCGCCAAGGa -3'
miRNA:   3'- -CGUuAGC--------CGCGACU------------UUCuGCGGUUCC- -5'
26477 5' -51.2 NC_005357.1 + 4103 0.66 0.87355
Target:  5'- gGUGggCGGCGCUGAAuu-CGUCGcGGu -3'
miRNA:   3'- -CGUuaGCCGCGACUUucuGCGGUuCC- -5'
26477 5' -51.2 NC_005357.1 + 14212 0.66 0.865252
Target:  5'- cGCGuggucGUCGGCGUggccgaccUGGAcaAGGCGCCGcaccugcuGGGc -3'
miRNA:   3'- -CGU-----UAGCCGCG--------ACUU--UCUGCGGU--------UCC- -5'
26477 5' -51.2 NC_005357.1 + 30478 0.66 0.865252
Target:  5'- gGUcAUCGcGUcaccuGCUGAAAGuCGUCGAGGu -3'
miRNA:   3'- -CGuUAGC-CG-----CGACUUUCuGCGGUUCC- -5'
26477 5' -51.2 NC_005357.1 + 34371 0.66 0.865252
Target:  5'- aGCGAccUgGGCGCgcgucaUGGAcGGCGgCAAGGa -3'
miRNA:   3'- -CGUU--AgCCGCG------ACUUuCUGCgGUUCC- -5'
26477 5' -51.2 NC_005357.1 + 19324 0.66 0.85669
Target:  5'- uCGAUgaaGGCGCggucuucgGAcAGGCGCCAGGcGg -3'
miRNA:   3'- cGUUAg--CCGCGa-------CUuUCUGCGGUUC-C- -5'
26477 5' -51.2 NC_005357.1 + 34495 0.66 0.85669
Target:  5'- gGCcg-UGGCG-UGAAgguGGACGCCGAGc -3'
miRNA:   3'- -CGuuaGCCGCgACUU---UCUGCGGUUCc -5'
26477 5' -51.2 NC_005357.1 + 15273 0.66 0.838807
Target:  5'- cGCGugCGGCGCgUGggGGACuUCGAGu -3'
miRNA:   3'- -CGUuaGCCGCG-ACuuUCUGcGGUUCc -5'
26477 5' -51.2 NC_005357.1 + 27581 0.66 0.838807
Target:  5'- aGCGugCGGCGCUGGc---CGCCAAcGGc -3'
miRNA:   3'- -CGUuaGCCGCGACUuucuGCGGUU-CC- -5'
26477 5' -51.2 NC_005357.1 + 14053 0.66 0.838807
Target:  5'- cGCGAaagccCGGCGCUGGgcGucguUGCCuAGGg -3'
miRNA:   3'- -CGUUa----GCCGCGACUuuCu---GCGGuUCC- -5'
26477 5' -51.2 NC_005357.1 + 10279 0.66 0.838807
Target:  5'- gGCAAggucgaguUCGGCcUUGAGggauucggGGGCGUCGAGGu -3'
miRNA:   3'- -CGUU--------AGCCGcGACUU--------UCUGCGGUUCC- -5'
26477 5' -51.2 NC_005357.1 + 25365 0.66 0.838807
Target:  5'- cGCcuUCGuGCGCgaggUGAAGGAUucgGCCAAGa -3'
miRNA:   3'- -CGuuAGC-CGCG----ACUUUCUG---CGGUUCc -5'
26477 5' -51.2 NC_005357.1 + 27235 0.67 0.829506
Target:  5'- cGCcAUCGGCGCauagGAGAaaAUGCCAugucAGGa -3'
miRNA:   3'- -CGuUAGCCGCGa---CUUUc-UGCGGU----UCC- -5'
26477 5' -51.2 NC_005357.1 + 30170 0.67 0.828563
Target:  5'- gGCAGUUGGCGCcagucggUGAAggccaugaaguAGcCGCCGGGc -3'
miRNA:   3'- -CGUUAGCCGCG-------ACUU-----------UCuGCGGUUCc -5'
26477 5' -51.2 NC_005357.1 + 26613 0.67 0.819978
Target:  5'- -gAGUCcuGCGCggu-GGugGCCGAGGg -3'
miRNA:   3'- cgUUAGc-CGCGacuuUCugCGGUUCC- -5'
26477 5' -51.2 NC_005357.1 + 18274 0.67 0.819978
Target:  5'- cGCAgccGUCgaGGCGCUGGGccAGGCGCgCAGccGGc -3'
miRNA:   3'- -CGU---UAG--CCGCGACUU--UCUGCG-GUU--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.