miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26478 3' -56.3 NC_005357.1 + 25821 0.66 0.5601
Target:  5'- aUCuGCAccgggcCGCCGUuGGCGCCG-GUCa -3'
miRNA:   3'- aAGuUGUa-----GCGGCAcCCGUGGCuCAG- -5'
26478 3' -56.3 NC_005357.1 + 27276 0.66 0.52718
Target:  5'- aUCAGcCGUCGCCcUGGGCgcauccGCCGccagcauggGGUCg -3'
miRNA:   3'- aAGUU-GUAGCGGcACCCG------UGGC---------UCAG- -5'
26478 3' -56.3 NC_005357.1 + 36031 0.66 0.52718
Target:  5'- -aCGACAUCaCCGaGGGCGCCGcGg- -3'
miRNA:   3'- aaGUUGUAGcGGCaCCCGUGGCuCag -5'
26478 3' -56.3 NC_005357.1 + 1697 0.66 0.526095
Target:  5'- gUCGAgAaauUCGCCGUGGGCcggcguGCCGGcgagggcGUCc -3'
miRNA:   3'- aAGUUgU---AGCGGCACCCG------UGGCU-------CAG- -5'
26478 3' -56.3 NC_005357.1 + 13661 0.66 0.516365
Target:  5'- ---cGCGaCGCCGUGcGCGCCGAGa- -3'
miRNA:   3'- aaguUGUaGCGGCACcCGUGGCUCag -5'
26478 3' -56.3 NC_005357.1 + 30458 0.67 0.484485
Target:  5'- aUCA--GUUGCCaggGGGCGCCG-GUCa -3'
miRNA:   3'- aAGUugUAGCGGca-CCCGUGGCuCAG- -5'
26478 3' -56.3 NC_005357.1 + 35343 0.68 0.443514
Target:  5'- gUgGGCG-CGCCGUGGGUagGCCGcggcGUCa -3'
miRNA:   3'- aAgUUGUaGCGGCACCCG--UGGCu---CAG- -5'
26478 3' -56.3 NC_005357.1 + 4179 0.68 0.423773
Target:  5'- gUCGAgGUguaGCCaGUGGGCGCCGAaaaGUUg -3'
miRNA:   3'- aAGUUgUAg--CGG-CACCCGUGGCU---CAG- -5'
26478 3' -56.3 NC_005357.1 + 17920 0.68 0.423773
Target:  5'- -aCGugAUCGgCGUGGGCGCCa---- -3'
miRNA:   3'- aaGUugUAGCgGCACCCGUGGcucag -5'
26478 3' -56.3 NC_005357.1 + 12630 0.69 0.395172
Target:  5'- cUCGGCAUCGCUGcUGccguccuuuGGCGUCGGGUCg -3'
miRNA:   3'- aAGUUGUAGCGGC-AC---------CCGUGGCUCAG- -5'
26478 3' -56.3 NC_005357.1 + 619 0.7 0.317205
Target:  5'- -cCAGCAgCGCCGUGgacacggcguccGGCGUCGAGUCg -3'
miRNA:   3'- aaGUUGUaGCGGCAC------------CCGUGGCUCAG- -5'
26478 3' -56.3 NC_005357.1 + 27486 0.71 0.264983
Target:  5'- --gAGCAUCGCCGaguUGGGCGCgcAGUCg -3'
miRNA:   3'- aagUUGUAGCGGC---ACCCGUGgcUCAG- -5'
26478 3' -56.3 NC_005357.1 + 19326 0.74 0.171798
Target:  5'- -----uGUCGCCGUGGGCGCCGccGUUg -3'
miRNA:   3'- aaguugUAGCGGCACCCGUGGCu-CAG- -5'
26478 3' -56.3 NC_005357.1 + 28870 1.08 0.000591
Target:  5'- gUUCAACAUCGCCGUGGGCACCGAGUCa -3'
miRNA:   3'- -AAGUUGUAGCGGCACCCGUGGCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.