Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 25821 | 0.66 | 0.5601 |
Target: 5'- aUCuGCAccgggcCGCCGUuGGCGCCG-GUCa -3' miRNA: 3'- aAGuUGUa-----GCGGCAcCCGUGGCuCAG- -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 36031 | 0.66 | 0.52718 |
Target: 5'- -aCGACAUCaCCGaGGGCGCCGcGg- -3' miRNA: 3'- aaGUUGUAGcGGCaCCCGUGGCuCag -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 27276 | 0.66 | 0.52718 |
Target: 5'- aUCAGcCGUCGCCcUGGGCgcauccGCCGccagcauggGGUCg -3' miRNA: 3'- aAGUU-GUAGCGGcACCCG------UGGC---------UCAG- -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 1697 | 0.66 | 0.526095 |
Target: 5'- gUCGAgAaauUCGCCGUGGGCcggcguGCCGGcgagggcGUCc -3' miRNA: 3'- aAGUUgU---AGCGGCACCCG------UGGCU-------CAG- -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 13661 | 0.66 | 0.516365 |
Target: 5'- ---cGCGaCGCCGUGcGCGCCGAGa- -3' miRNA: 3'- aaguUGUaGCGGCACcCGUGGCUCag -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 30458 | 0.67 | 0.484485 |
Target: 5'- aUCA--GUUGCCaggGGGCGCCG-GUCa -3' miRNA: 3'- aAGUugUAGCGGca-CCCGUGGCuCAG- -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 35343 | 0.68 | 0.443514 |
Target: 5'- gUgGGCG-CGCCGUGGGUagGCCGcggcGUCa -3' miRNA: 3'- aAgUUGUaGCGGCACCCG--UGGCu---CAG- -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 4179 | 0.68 | 0.423773 |
Target: 5'- gUCGAgGUguaGCCaGUGGGCGCCGAaaaGUUg -3' miRNA: 3'- aAGUUgUAg--CGG-CACCCGUGGCU---CAG- -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 17920 | 0.68 | 0.423773 |
Target: 5'- -aCGugAUCGgCGUGGGCGCCa---- -3' miRNA: 3'- aaGUugUAGCgGCACCCGUGGcucag -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 12630 | 0.69 | 0.395172 |
Target: 5'- cUCGGCAUCGCUGcUGccguccuuuGGCGUCGGGUCg -3' miRNA: 3'- aAGUUGUAGCGGC-AC---------CCGUGGCUCAG- -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 619 | 0.7 | 0.317205 |
Target: 5'- -cCAGCAgCGCCGUGgacacggcguccGGCGUCGAGUCg -3' miRNA: 3'- aaGUUGUaGCGGCAC------------CCGUGGCUCAG- -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 27486 | 0.71 | 0.264983 |
Target: 5'- --gAGCAUCGCCGaguUGGGCGCgcAGUCg -3' miRNA: 3'- aagUUGUAGCGGC---ACCCGUGgcUCAG- -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 19326 | 0.74 | 0.171798 |
Target: 5'- -----uGUCGCCGUGGGCGCCGccGUUg -3' miRNA: 3'- aaguugUAGCGGCACCCGUGGCu-CAG- -5' |
|||||||
26478 | 3' | -56.3 | NC_005357.1 | + | 28870 | 1.08 | 0.000591 |
Target: 5'- gUUCAACAUCGCCGUGGGCACCGAGUCa -3' miRNA: 3'- -AAGUUGUAGCGGCACCCGUGGCUCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home