miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26478 5' -56.5 NC_005357.1 + 13307 0.67 0.52346
Target:  5'- uGCGGccUCGcGCGCGuGAcCGGCAGcaagucCCGCa -3'
miRNA:   3'- -UGUCa-AGC-CGCGC-CU-GCCGUUu-----GGCG- -5'
26478 5' -56.5 NC_005357.1 + 12017 0.67 0.52346
Target:  5'- aGCAGcgCGGcCGUGGcCGGCGAggucuuGCCcaGCg -3'
miRNA:   3'- -UGUCaaGCC-GCGCCuGCCGUU------UGG--CG- -5'
26478 5' -56.5 NC_005357.1 + 16237 0.67 0.51287
Target:  5'- uCGGUgagCGGCacgauaugGCGGAUGGCGuuGGCCucGCg -3'
miRNA:   3'- uGUCAa--GCCG--------CGCCUGCCGU--UUGG--CG- -5'
26478 5' -56.5 NC_005357.1 + 24557 0.67 0.50237
Target:  5'- cGCAGcgCGGCGaUGGcgaggccggccACGGuCGGGCCGUc -3'
miRNA:   3'- -UGUCaaGCCGC-GCC-----------UGCC-GUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 39834 0.67 0.50237
Target:  5'- --cGUUcCGGuUGCaacaGGGCGGCAAGCgCGCg -3'
miRNA:   3'- uguCAA-GCC-GCG----CCUGCCGUUUG-GCG- -5'
26478 5' -56.5 NC_005357.1 + 6535 0.67 0.491965
Target:  5'- cACAGUUCgaugcuGGCGuuGACGuaGCAGcCCGCg -3'
miRNA:   3'- -UGUCAAG------CCGCgcCUGC--CGUUuGGCG- -5'
26478 5' -56.5 NC_005357.1 + 20104 0.67 0.491965
Target:  5'- ----cUCGGCGCGuuCGGCAcGGCCaGCa -3'
miRNA:   3'- ugucaAGCCGCGCcuGCCGU-UUGG-CG- -5'
26478 5' -56.5 NC_005357.1 + 25148 0.67 0.491965
Target:  5'- cGCGGcgcCGGCuucGUGGACGGCAAuauccccggcuuGCCGa -3'
miRNA:   3'- -UGUCaa-GCCG---CGCCUGCCGUU------------UGGCg -5'
26478 5' -56.5 NC_005357.1 + 28393 0.67 0.491965
Target:  5'- cCAGUUCGaCGCcGGCGGCGcGgCGCc -3'
miRNA:   3'- uGUCAAGCcGCGcCUGCCGUuUgGCG- -5'
26478 5' -56.5 NC_005357.1 + 1539 0.67 0.491965
Target:  5'- aGCAGUUCGGCcuUGGuaaaGcCGAACCGCu -3'
miRNA:   3'- -UGUCAAGCCGc-GCCug--CcGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 1460 0.67 0.491965
Target:  5'- gACGGcgCGGUcgGCGGccuccUGGCAGGCCGg -3'
miRNA:   3'- -UGUCaaGCCG--CGCCu----GCCGUUUGGCg -5'
26478 5' -56.5 NC_005357.1 + 37735 0.67 0.491965
Target:  5'- gGCGGcgUCGGUGCcuuucucaccgGGGCGGCuaccuACgGCa -3'
miRNA:   3'- -UGUCa-AGCCGCG-----------CCUGCCGuu---UGgCG- -5'
26478 5' -56.5 NC_005357.1 + 33589 0.68 0.481661
Target:  5'- gGCuacgUCGGCGaGGACGGUAucaaGGCCGa -3'
miRNA:   3'- -UGuca-AGCCGCgCCUGCCGU----UUGGCg -5'
26478 5' -56.5 NC_005357.1 + 30575 0.68 0.481661
Target:  5'- ----aUUGGCGCGGGguucgcccaGGCcAACCGCg -3'
miRNA:   3'- ugucaAGCCGCGCCUg--------CCGuUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 9778 0.68 0.481661
Target:  5'- gGCAGcuucgCGGCGCcgaacuucgacaGGACaGC-GACCGCg -3'
miRNA:   3'- -UGUCaa---GCCGCG------------CCUGcCGuUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 9852 0.68 0.47859
Target:  5'- cACAGcgUCGGCGguguccugauacguCGGAgCGGCAucGCCGg -3'
miRNA:   3'- -UGUCa-AGCCGC--------------GCCU-GCCGUu-UGGCg -5'
26478 5' -56.5 NC_005357.1 + 7441 0.68 0.471462
Target:  5'- aGCAGUUCGGCuuCGGccuuCGcGCGAAUgGCc -3'
miRNA:   3'- -UGUCAAGCCGc-GCCu---GC-CGUUUGgCG- -5'
26478 5' -56.5 NC_005357.1 + 17026 0.68 0.461374
Target:  5'- --uGggCGGCaCGGACGGCuacAACuCGCa -3'
miRNA:   3'- uguCaaGCCGcGCCUGCCGu--UUG-GCG- -5'
26478 5' -56.5 NC_005357.1 + 32779 0.68 0.451401
Target:  5'- aGCGGUUCcGCGCGuGGCuGCucaacguguACCGCg -3'
miRNA:   3'- -UGUCAAGcCGCGC-CUGcCGuu-------UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 34769 0.68 0.451401
Target:  5'- -aAGaaCGGCGCGuGuACGGCAAggaGCCGg -3'
miRNA:   3'- ugUCaaGCCGCGC-C-UGCCGUU---UGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.