Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 21178 | 0.68 | 0.568668 |
Target: 5'- uGCUGGGcauCGACCCCGAguugaucgUGCCGggCAAUc -3' miRNA: 3'- -UGACCUu--GUUGGGGCU--------GCGGUa-GUUA- -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 19700 | 0.68 | 0.568668 |
Target: 5'- uGCUGGGGCAAUaaCGugGCCGagCAAa -3' miRNA: 3'- -UGACCUUGUUGggGCugCGGUa-GUUa -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 16862 | 0.68 | 0.557383 |
Target: 5'- --cGGcguACAACUCCGACGCCGacaUCAu- -3' miRNA: 3'- ugaCCu--UGUUGGGGCUGCGGU---AGUua -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 32968 | 0.69 | 0.546163 |
Target: 5'- uACUGGcaaGACCCgGACGCCAa---- -3' miRNA: 3'- -UGACCuugUUGGGgCUGCGGUaguua -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 13583 | 0.69 | 0.545044 |
Target: 5'- cGCUGGGACAGCUUCGGCaaguccgGCCG-CAAc -3' miRNA: 3'- -UGACCUUGUUGGGGCUG-------CGGUaGUUa -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 28683 | 0.69 | 0.52395 |
Target: 5'- cGCUGGAACAAaacaaCCCGACcuauGCC-UCGGc -3' miRNA: 3'- -UGACCUUGUUg----GGGCUG----CGGuAGUUa -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 41829 | 0.69 | 0.512972 |
Target: 5'- uGCUGGc-CGACCCgcaGGCGgCCAUCAAa -3' miRNA: 3'- -UGACCuuGUUGGGg--CUGC-GGUAGUUa -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 12336 | 0.69 | 0.512972 |
Target: 5'- cCUGGGACAagggccguggcGCCCgGGCGCCG-CAc- -3' miRNA: 3'- uGACCUUGU-----------UGGGgCUGCGGUaGUua -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 38135 | 0.69 | 0.502091 |
Target: 5'- aGCUGGuGCAguucACCgCCGACacgGCCAUCAc- -3' miRNA: 3'- -UGACCuUGU----UGG-GGCUG---CGGUAGUua -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 33486 | 0.7 | 0.48064 |
Target: 5'- uGCUGGAACAguucgGCgaacuguccacgCCCGAaGCCAUCGAg -3' miRNA: 3'- -UGACCUUGU-----UG------------GGGCUgCGGUAGUUa -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 33195 | 0.7 | 0.470083 |
Target: 5'- aACUGGAACuGCCgCCGggcGCGCCG-CAGa -3' miRNA: 3'- -UGACCUUGuUGG-GGC---UGCGGUaGUUa -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 37163 | 0.7 | 0.439149 |
Target: 5'- cGCUGGAACGacgcauugccgACCCCGACcuGCCGgcCGAa -3' miRNA: 3'- -UGACCUUGU-----------UGGGGCUG--CGGUa-GUUa -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 13067 | 0.71 | 0.429098 |
Target: 5'- gGCUGGGGCAagGCCaCCGGCGCgugguUCGAg -3' miRNA: 3'- -UGACCUUGU--UGG-GGCUGCGgu---AGUUa -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 40367 | 0.72 | 0.345132 |
Target: 5'- uGCUGGGcgACGACCCCGaggaauugcGCGCCGUg--- -3' miRNA: 3'- -UGACCU--UGUUGGGGC---------UGCGGUAguua -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 19991 | 0.73 | 0.303845 |
Target: 5'- aACUGG-ACGAgUCCGcCGCCGUCAAg -3' miRNA: 3'- -UGACCuUGUUgGGGCuGCGGUAGUUa -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 19040 | 0.75 | 0.252583 |
Target: 5'- cCUGGuAGCGGCCgCCGGCGgCGUCGAUc -3' miRNA: 3'- uGACC-UUGUUGG-GGCUGCgGUAGUUA- -5' |
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26479 | 3' | -53.6 | NC_005357.1 | + | 28529 | 1.05 | 0.0018 |
Target: 5'- aACUGGAACAACCCCGACGCCAUCAAUu -3' miRNA: 3'- -UGACCUUGUUGGGGCUGCGGUAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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