miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26479 3' -53.6 NC_005357.1 + 2421 0.66 0.727848
Target:  5'- gACUGGAACcACCUCGauuugaagGCGCCGa---- -3'
miRNA:   3'- -UGACCUUGuUGGGGC--------UGCGGUaguua -5'
26479 3' -53.6 NC_005357.1 + 4378 0.66 0.716749
Target:  5'- --cGGAugcGCAGCCa-GGCGCCGUCGc- -3'
miRNA:   3'- ugaCCU---UGUUGGggCUGCGGUAGUua -5'
26479 3' -53.6 NC_005357.1 + 6374 0.67 0.625746
Target:  5'- cGCUGGGuuACAccaggucggccGCCgCGGCGCCcUCGGUg -3'
miRNA:   3'- -UGACCU--UGU-----------UGGgGCUGCGGuAGUUA- -5'
26479 3' -53.6 NC_005357.1 + 9169 0.66 0.705559
Target:  5'- gGCcGGcAGCGACaaCuuGGCGCCGUCGAc -3'
miRNA:   3'- -UGaCC-UUGUUG--GggCUGCGGUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 11826 0.66 0.727848
Target:  5'- gACUGGAACAGaCCggCCG-CGCCG-CGGUu -3'
miRNA:   3'- -UGACCUUGUU-GG--GGCuGCGGUaGUUA- -5'
26479 3' -53.6 NC_005357.1 + 11857 0.66 0.727848
Target:  5'- cCUGGGcgAACCCCG-CGCCAauaUCGc- -3'
miRNA:   3'- uGACCUugUUGGGGCuGCGGU---AGUua -5'
26479 3' -53.6 NC_005357.1 + 12336 0.69 0.512972
Target:  5'- cCUGGGACAagggccguggcGCCCgGGCGCCG-CAc- -3'
miRNA:   3'- uGACCUUGU-----------UGGGgCUGCGGUaGUua -5'
26479 3' -53.6 NC_005357.1 + 13067 0.71 0.429098
Target:  5'- gGCUGGGGCAagGCCaCCGGCGCgugguUCGAg -3'
miRNA:   3'- -UGACCUUGU--UGG-GGCUGCGgu---AGUUa -5'
26479 3' -53.6 NC_005357.1 + 13583 0.69 0.545044
Target:  5'- cGCUGGGACAGCUUCGGCaaguccgGCCG-CAAc -3'
miRNA:   3'- -UGACCUUGUUGGGGCUG-------CGGUaGUUa -5'
26479 3' -53.6 NC_005357.1 + 16379 0.66 0.679548
Target:  5'- cGCaUGGAGCGcgcccgccgcgcggGCUuuGAUGCCAUCGc- -3'
miRNA:   3'- -UG-ACCUUGU--------------UGGggCUGCGGUAGUua -5'
26479 3' -53.6 NC_005357.1 + 16862 0.68 0.557383
Target:  5'- --cGGcguACAACUCCGACGCCGacaUCAu- -3'
miRNA:   3'- ugaCCu--UGUUGGGGCUGCGGU---AGUua -5'
26479 3' -53.6 NC_005357.1 + 17491 0.68 0.591398
Target:  5'- --cGGAcuACAACCCCGAgGaCAUCAu- -3'
miRNA:   3'- ugaCCU--UGUUGGGGCUgCgGUAGUua -5'
26479 3' -53.6 NC_005357.1 + 18309 0.67 0.614276
Target:  5'- gGCUGGAcuACGACCCCuACGCgCG-CAu- -3'
miRNA:   3'- -UGACCU--UGUUGGGGcUGCG-GUaGUua -5'
26479 3' -53.6 NC_005357.1 + 19040 0.75 0.252583
Target:  5'- cCUGGuAGCGGCCgCCGGCGgCGUCGAUc -3'
miRNA:   3'- uGACC-UUGUUGG-GGCUGCgGUAGUUA- -5'
26479 3' -53.6 NC_005357.1 + 19700 0.68 0.568668
Target:  5'- uGCUGGGGCAAUaaCGugGCCGagCAAa -3'
miRNA:   3'- -UGACCUUGUUGggGCugCGGUa-GUUa -5'
26479 3' -53.6 NC_005357.1 + 19991 0.73 0.303845
Target:  5'- aACUGG-ACGAgUCCGcCGCCGUCAAg -3'
miRNA:   3'- -UGACCuUGUUgGGGCuGCGGUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 21178 0.68 0.568668
Target:  5'- uGCUGGGcauCGACCCCGAguugaucgUGCCGggCAAUc -3'
miRNA:   3'- -UGACCUu--GUUGGGGCU--------GCGGUa-GUUA- -5'
26479 3' -53.6 NC_005357.1 + 24039 0.66 0.716749
Target:  5'- -gUGGcc--GCCaCCGGCGCCAUCGGc -3'
miRNA:   3'- ugACCuuguUGG-GGCUGCGGUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 24767 0.66 0.694292
Target:  5'- ------cCAGCCcgCCGACGCCAUCAAg -3'
miRNA:   3'- ugaccuuGUUGG--GGCUGCGGUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 26964 0.67 0.660147
Target:  5'- aACUGGAcgGCAGCUUCGGCcaaggGCgCGUCAAg -3'
miRNA:   3'- -UGACCU--UGUUGGGGCUG-----CG-GUAGUUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.