miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26479 3' -53.6 NC_005357.1 + 21178 0.68 0.568668
Target:  5'- uGCUGGGcauCGACCCCGAguugaucgUGCCGggCAAUc -3'
miRNA:   3'- -UGACCUu--GUUGGGGCU--------GCGGUa-GUUA- -5'
26479 3' -53.6 NC_005357.1 + 19700 0.68 0.568668
Target:  5'- uGCUGGGGCAAUaaCGugGCCGagCAAa -3'
miRNA:   3'- -UGACCUUGUUGggGCugCGGUa-GUUa -5'
26479 3' -53.6 NC_005357.1 + 16862 0.68 0.557383
Target:  5'- --cGGcguACAACUCCGACGCCGacaUCAu- -3'
miRNA:   3'- ugaCCu--UGUUGGGGCUGCGGU---AGUua -5'
26479 3' -53.6 NC_005357.1 + 32968 0.69 0.546163
Target:  5'- uACUGGcaaGACCCgGACGCCAa---- -3'
miRNA:   3'- -UGACCuugUUGGGgCUGCGGUaguua -5'
26479 3' -53.6 NC_005357.1 + 13583 0.69 0.545044
Target:  5'- cGCUGGGACAGCUUCGGCaaguccgGCCG-CAAc -3'
miRNA:   3'- -UGACCUUGUUGGGGCUG-------CGGUaGUUa -5'
26479 3' -53.6 NC_005357.1 + 28683 0.69 0.52395
Target:  5'- cGCUGGAACAAaacaaCCCGACcuauGCC-UCGGc -3'
miRNA:   3'- -UGACCUUGUUg----GGGCUG----CGGuAGUUa -5'
26479 3' -53.6 NC_005357.1 + 41829 0.69 0.512972
Target:  5'- uGCUGGc-CGACCCgcaGGCGgCCAUCAAa -3'
miRNA:   3'- -UGACCuuGUUGGGg--CUGC-GGUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 12336 0.69 0.512972
Target:  5'- cCUGGGACAagggccguggcGCCCgGGCGCCG-CAc- -3'
miRNA:   3'- uGACCUUGU-----------UGGGgCUGCGGUaGUua -5'
26479 3' -53.6 NC_005357.1 + 38135 0.69 0.502091
Target:  5'- aGCUGGuGCAguucACCgCCGACacgGCCAUCAc- -3'
miRNA:   3'- -UGACCuUGU----UGG-GGCUG---CGGUAGUua -5'
26479 3' -53.6 NC_005357.1 + 33486 0.7 0.48064
Target:  5'- uGCUGGAACAguucgGCgaacuguccacgCCCGAaGCCAUCGAg -3'
miRNA:   3'- -UGACCUUGU-----UG------------GGGCUgCGGUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 33195 0.7 0.470083
Target:  5'- aACUGGAACuGCCgCCGggcGCGCCG-CAGa -3'
miRNA:   3'- -UGACCUUGuUGG-GGC---UGCGGUaGUUa -5'
26479 3' -53.6 NC_005357.1 + 37163 0.7 0.439149
Target:  5'- cGCUGGAACGacgcauugccgACCCCGACcuGCCGgcCGAa -3'
miRNA:   3'- -UGACCUUGU-----------UGGGGCUG--CGGUa-GUUa -5'
26479 3' -53.6 NC_005357.1 + 13067 0.71 0.429098
Target:  5'- gGCUGGGGCAagGCCaCCGGCGCgugguUCGAg -3'
miRNA:   3'- -UGACCUUGU--UGG-GGCUGCGgu---AGUUa -5'
26479 3' -53.6 NC_005357.1 + 40367 0.72 0.345132
Target:  5'- uGCUGGGcgACGACCCCGaggaauugcGCGCCGUg--- -3'
miRNA:   3'- -UGACCU--UGUUGGGGC---------UGCGGUAguua -5'
26479 3' -53.6 NC_005357.1 + 19991 0.73 0.303845
Target:  5'- aACUGG-ACGAgUCCGcCGCCGUCAAg -3'
miRNA:   3'- -UGACCuUGUUgGGGCuGCGGUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 19040 0.75 0.252583
Target:  5'- cCUGGuAGCGGCCgCCGGCGgCGUCGAUc -3'
miRNA:   3'- uGACC-UUGUUGG-GGCUGCgGUAGUUA- -5'
26479 3' -53.6 NC_005357.1 + 28529 1.05 0.0018
Target:  5'- aACUGGAACAACCCCGACGCCAUCAAUu -3'
miRNA:   3'- -UGACCUUGUUGGGGCUGCGGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.