miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2648 5' -54.9 NC_001491.2 + 32914 0.66 0.930256
Target:  5'- aCUCGCGGGAcg---GGCUGUGgGCGa -3'
miRNA:   3'- -GAGCGCUCUuaguaUCGGCGCgCGUc -5'
2648 5' -54.9 NC_001491.2 + 20370 0.67 0.907425
Target:  5'- -cCGCGGuGGUgGUAGCCGCgGUGguGg -3'
miRNA:   3'- gaGCGCUcUUAgUAUCGGCG-CGCguC- -5'
2648 5' -54.9 NC_001491.2 + 20340 0.67 0.907425
Target:  5'- -cCGCGGuGGUgGUAGCCGCgGUGguGg -3'
miRNA:   3'- gaGCGCUcUUAgUAUCGGCG-CGCguC- -5'
2648 5' -54.9 NC_001491.2 + 137085 0.67 0.907425
Target:  5'- gUCGUG-GAA--GUAGCCGCcGCGCGu -3'
miRNA:   3'- gAGCGCuCUUagUAUCGGCG-CGCGUc -5'
2648 5' -54.9 NC_001491.2 + 108956 0.67 0.901113
Target:  5'- cCUCGCGcAGAAUauggGUAGCCcUGUGCAu -3'
miRNA:   3'- -GAGCGC-UCUUAg---UAUCGGcGCGCGUc -5'
2648 5' -54.9 NC_001491.2 + 88751 0.67 0.894563
Target:  5'- -cCGCuGGAGUCcgGGUagguacgaucUGCGCGCAGg -3'
miRNA:   3'- gaGCGcUCUUAGuaUCG----------GCGCGCGUC- -5'
2648 5' -54.9 NC_001491.2 + 74712 0.67 0.880765
Target:  5'- uUCgGCGAGucgCGUGGCCaGCgGCGCAu -3'
miRNA:   3'- gAG-CGCUCuuaGUAUCGG-CG-CGCGUc -5'
2648 5' -54.9 NC_001491.2 + 20400 0.68 0.866066
Target:  5'- -cCGCGGuGGUgGUAGCCGCGgugguUGCAGa -3'
miRNA:   3'- gaGCGCUcUUAgUAUCGGCGC-----GCGUC- -5'
2648 5' -54.9 NC_001491.2 + 10146 0.68 0.850507
Target:  5'- -cCGCG-GAggCcUGGCCGCGCGUg- -3'
miRNA:   3'- gaGCGCuCUuaGuAUCGGCGCGCGuc -5'
2648 5' -54.9 NC_001491.2 + 102638 0.68 0.850507
Target:  5'- -cUGUGAGGAUCGcGGCCGCGaucuuaGCGu -3'
miRNA:   3'- gaGCGCUCUUAGUaUCGGCGCg-----CGUc -5'
2648 5' -54.9 NC_001491.2 + 53719 0.69 0.817022
Target:  5'- aUCGCGGG---CAUGG-CGCGUGCAGc -3'
miRNA:   3'- gAGCGCUCuuaGUAUCgGCGCGCGUC- -5'
2648 5' -54.9 NC_001491.2 + 134722 0.69 0.790083
Target:  5'- -cUGCGAGGuggCGUAucggagcuccGCCGCGCGCGc -3'
miRNA:   3'- gaGCGCUCUua-GUAU----------CGGCGCGCGUc -5'
2648 5' -54.9 NC_001491.2 + 100438 0.7 0.742405
Target:  5'- gCUCGC-AGcauGUCAUAGUCGCGC-CGGg -3'
miRNA:   3'- -GAGCGcUCu--UAGUAUCGGCGCGcGUC- -5'
2648 5' -54.9 NC_001491.2 + 35358 0.7 0.742405
Target:  5'- uUCGCGAGGGcCGaGGCCGCguucGCGCGc -3'
miRNA:   3'- gAGCGCUCUUaGUaUCGGCG----CGCGUc -5'
2648 5' -54.9 NC_001491.2 + 127261 0.7 0.742405
Target:  5'- uCUCGUGAGAuUUGUGGCgGuCGCGUAu -3'
miRNA:   3'- -GAGCGCUCUuAGUAUCGgC-GCGCGUc -5'
2648 5' -54.9 NC_001491.2 + 9857 0.74 0.528413
Target:  5'- gCUCGCG-GAG----GGCCGCGCGCAa -3'
miRNA:   3'- -GAGCGCuCUUaguaUCGGCGCGCGUc -5'
2648 5' -54.9 NC_001491.2 + 63624 0.75 0.469117
Target:  5'- -aCGCGAGuuUCcgAGCCGCGCuagcucgGCAGg -3'
miRNA:   3'- gaGCGCUCuuAGuaUCGGCGCG-------CGUC- -5'
2648 5' -54.9 NC_001491.2 + 116841 0.77 0.397772
Target:  5'- --aGCGAGAcgCAccGCCGCGCGUGGg -3'
miRNA:   3'- gagCGCUCUuaGUauCGGCGCGCGUC- -5'
2648 5' -54.9 NC_001491.2 + 109691 1.08 0.003803
Target:  5'- aCUCGCGAGAAUCAUAGCCGCGCGCAGc -3'
miRNA:   3'- -GAGCGCUCUUAGUAUCGGCGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.