miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26481 3' -59.8 NC_005357.1 + 11909 0.67 0.337582
Target:  5'- uGCGCUgaccaGAUACuucaccgCCGUGCCCAGGCUGGa -3'
miRNA:   3'- -CGCGAg----UUGUG-------GGCGUGGGUCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 40412 0.67 0.330265
Target:  5'- uGCGCgacuuCGCCagcgaGCGCCUGGGCCu- -3'
miRNA:   3'- -CGCGaguu-GUGGg----CGUGGGUCCGGuu -5'
26481 3' -59.8 NC_005357.1 + 22983 0.67 0.322274
Target:  5'- gGCGUgCAGCccgagaaguCCCGCACCgugCAGGUCAAg -3'
miRNA:   3'- -CGCGaGUUGu--------GGGCGUGG---GUCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 41967 0.67 0.314427
Target:  5'- cCGCgaCAGCGCCCGCAagCuGGCCGc -3'
miRNA:   3'- cGCGa-GUUGUGGGCGUggGuCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 31638 0.67 0.314427
Target:  5'- gGCGCagCAGUACauGCAauCCCAGGCCGAa -3'
miRNA:   3'- -CGCGa-GUUGUGggCGU--GGGUCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 21326 0.67 0.314427
Target:  5'- cGgGCUUGAUGCCggccacCGCGCCCAGGUUg- -3'
miRNA:   3'- -CgCGAGUUGUGG------GCGUGGGUCCGGuu -5'
26481 3' -59.8 NC_005357.1 + 20013 0.67 0.305964
Target:  5'- uUGCUCGgcauggcGCGCCUGCAUCaCAGGCa-- -3'
miRNA:   3'- cGCGAGU-------UGUGGGCGUGG-GUCCGguu -5'
26481 3' -59.8 NC_005357.1 + 1294 0.67 0.299171
Target:  5'- cCGC-CcACACcgCCGCGCCCAGGgCGAc -3'
miRNA:   3'- cGCGaGuUGUG--GGCGUGGGUCCgGUU- -5'
26481 3' -59.8 NC_005357.1 + 37803 0.67 0.299171
Target:  5'- aGCGUggccCAGCAucCCCGCcgacaucaucGCCgAGGCCGAg -3'
miRNA:   3'- -CGCGa---GUUGU--GGGCG----------UGGgUCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 36815 0.67 0.299171
Target:  5'- cGCGC-CAcGCGCgaaaCGCACCCcgccgaguGGGCCAAa -3'
miRNA:   3'- -CGCGaGU-UGUGg---GCGUGGG--------UCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 25804 0.67 0.298423
Target:  5'- cGCGCUCggUaucguugAUCUGCA-CCGGGCCGc -3'
miRNA:   3'- -CGCGAGuuG-------UGGGCGUgGGUCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 2842 0.68 0.29176
Target:  5'- cGCGCagCGGCGCCaGCACCagcgagGGGCCu- -3'
miRNA:   3'- -CGCGa-GUUGUGGgCGUGGg-----UCCGGuu -5'
26481 3' -59.8 NC_005357.1 + 34448 0.68 0.284493
Target:  5'- aGCGCggCGACAuggaaaccacgaUgCGCGCCgAGGCCAc -3'
miRNA:   3'- -CGCGa-GUUGU------------GgGCGUGGgUCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 39679 0.68 0.27737
Target:  5'- aGUGgUCGgcACGCCCGagcaGCgCCGGGCCGc -3'
miRNA:   3'- -CGCgAGU--UGUGGGCg---UG-GGUCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 12827 0.68 0.27737
Target:  5'- gGCGCUgGACaacuggcaaACCgCGCGCCUGGGCgCGg -3'
miRNA:   3'- -CGCGAgUUG---------UGG-GCGUGGGUCCG-GUu -5'
26481 3' -59.8 NC_005357.1 + 1754 0.68 0.27737
Target:  5'- gGCGgUCAugGCcgGCCUGCGCCUggcgcgucGGGCCGAu -3'
miRNA:   3'- -CGCgAGU--UG--UGGGCGUGGG--------UCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 41801 0.68 0.27737
Target:  5'- cCGUUC---ACCCGCGCCgAGGCUGAg -3'
miRNA:   3'- cGCGAGuugUGGGCGUGGgUCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 29238 0.68 0.276666
Target:  5'- gGCGUaCAACGCCgGCcaagggcGCCCAgcgcGGCCGAc -3'
miRNA:   3'- -CGCGaGUUGUGGgCG-------UGGGU----CCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 4775 0.68 0.270391
Target:  5'- gGCGUUCGccCACaCUGCGCCCAGcacGCCGg -3'
miRNA:   3'- -CGCGAGUu-GUG-GGCGUGGGUC---CGGUu -5'
26481 3' -59.8 NC_005357.1 + 186 0.68 0.270391
Target:  5'- uCGCUgGGCACCgucaCGCugCCGGGCg-- -3'
miRNA:   3'- cGCGAgUUGUGG----GCGugGGUCCGguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.