miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26482 3' -54.8 NC_005357.1 + 2726 0.66 0.655912
Target:  5'- gGCCGGaCG-CUUgAGCGCG-GCccggCGCu -3'
miRNA:   3'- -UGGCC-GCuGAAgUUGCGCuCGua--GCG- -5'
26482 3' -54.8 NC_005357.1 + 30683 0.66 0.649199
Target:  5'- --aGGCGGCgggaauugucggugUUGugGCGGGCAUgGCu -3'
miRNA:   3'- uggCCGCUGa-------------AGUugCGCUCGUAgCG- -5'
26482 3' -54.8 NC_005357.1 + 14588 0.66 0.64472
Target:  5'- uGCCGGCGGCcgauccgcuuUUCAGCa-GuGCGUCGg -3'
miRNA:   3'- -UGGCCGCUG----------AAGUUGcgCuCGUAGCg -5'
26482 3' -54.8 NC_005357.1 + 7240 0.67 0.633515
Target:  5'- uUCGGCcACU--GGCGCGGGCcgauGUCGCc -3'
miRNA:   3'- uGGCCGcUGAagUUGCGCUCG----UAGCG- -5'
26482 3' -54.8 NC_005357.1 + 13569 0.67 0.633515
Target:  5'- -aCGGCGAUgUUgAACGCGcGC-UCGCc -3'
miRNA:   3'- ugGCCGCUG-AAgUUGCGCuCGuAGCG- -5'
26482 3' -54.8 NC_005357.1 + 37487 0.67 0.633515
Target:  5'- aACCucGCaGACgugCAGaccguCGCGGGCAUCGCu -3'
miRNA:   3'- -UGGc-CG-CUGaa-GUU-----GCGCUCGUAGCG- -5'
26482 3' -54.8 NC_005357.1 + 7433 0.67 0.622309
Target:  5'- gGCCGGCcagcaguucGGCUUCGgccuucGCGCGAaugGCcUUGCa -3'
miRNA:   3'- -UGGCCG---------CUGAAGU------UGCGCU---CGuAGCG- -5'
26482 3' -54.8 NC_005357.1 + 14721 0.67 0.622309
Target:  5'- gACCGGCGGCgagCcGCuGCcGGCG-CGCg -3'
miRNA:   3'- -UGGCCGCUGaa-GuUG-CGcUCGUaGCG- -5'
26482 3' -54.8 NC_005357.1 + 12613 0.67 0.622309
Target:  5'- cGCaUGGCGc---CGACGCGcucGGCAUCGCu -3'
miRNA:   3'- -UG-GCCGCugaaGUUGCGC---UCGUAGCG- -5'
26482 3' -54.8 NC_005357.1 + 19859 0.67 0.622309
Target:  5'- aGCgUGGUGAgUUCgGGCGUGccgaaGGCGUCGCg -3'
miRNA:   3'- -UG-GCCGCUgAAG-UUGCGC-----UCGUAGCG- -5'
26482 3' -54.8 NC_005357.1 + 29203 0.67 0.622309
Target:  5'- gACCGGCagg-UCgGACGCGcGCAUgGCg -3'
miRNA:   3'- -UGGCCGcugaAG-UUGCGCuCGUAgCG- -5'
26482 3' -54.8 NC_005357.1 + 30963 0.67 0.621189
Target:  5'- aGCUGGCGgacuACUUCGGCGUGAcgguggacgaucuGCucacgCGCg -3'
miRNA:   3'- -UGGCCGC----UGAAGUUGCGCU-------------CGua---GCG- -5'
26482 3' -54.8 NC_005357.1 + 18521 0.67 0.611112
Target:  5'- uGCCGGC-AUggaAGcCGCGGGCGUgGCg -3'
miRNA:   3'- -UGGCCGcUGaagUU-GCGCUCGUAgCG- -5'
26482 3' -54.8 NC_005357.1 + 23910 0.67 0.611112
Target:  5'- cGCCcGCGGCUUCcAUGCcGGCAUagGCg -3'
miRNA:   3'- -UGGcCGCUGAAGuUGCGcUCGUAg-CG- -5'
26482 3' -54.8 NC_005357.1 + 36049 0.67 0.599934
Target:  5'- gGCCGGCcugcgccuGAUUgcCGACGUGGGCcgguUCGCc -3'
miRNA:   3'- -UGGCCG--------CUGAa-GUUGCGCUCGu---AGCG- -5'
26482 3' -54.8 NC_005357.1 + 28402 0.67 0.599934
Target:  5'- cGCCGGCGGCg-CGGCGCcAGUAgauGCc -3'
miRNA:   3'- -UGGCCGCUGaaGUUGCGcUCGUag-CG- -5'
26482 3' -54.8 NC_005357.1 + 1372 0.67 0.599934
Target:  5'- uCCGGCGACcgaAGCGCaAGUccUCGCg -3'
miRNA:   3'- uGGCCGCUGaagUUGCGcUCGu-AGCG- -5'
26482 3' -54.8 NC_005357.1 + 29997 0.67 0.599934
Target:  5'- gUCGGCGACaUCGACaGCGccaccaaggacGGCAUCa- -3'
miRNA:   3'- uGGCCGCUGaAGUUG-CGC-----------UCGUAGcg -5'
26482 3' -54.8 NC_005357.1 + 25673 0.67 0.599934
Target:  5'- cGCCGGUGGCU---ACGCccacGAGCGUgacCGCc -3'
miRNA:   3'- -UGGCCGCUGAaguUGCG----CUCGUA---GCG- -5'
26482 3' -54.8 NC_005357.1 + 11419 0.67 0.599934
Target:  5'- gGCCGGCaagcccgugGACaggUCGcGCGUGAGCAgaUCGUc -3'
miRNA:   3'- -UGGCCG---------CUGa--AGU-UGCGCUCGU--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.