Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26482 | 5' | -59.5 | NC_005357.1 | + | 40669 | 0.67 | 0.346957 |
Target: 5'- aCGCGCca--GGCGC---AGGCCGGCc -3' miRNA: 3'- cGCGCGucagCCGUGaacUCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 2417 | 0.67 | 0.346957 |
Target: 5'- -aGCGUAGguguaCGGCAgc--AGGCCGGCc -3' miRNA: 3'- cgCGCGUCa----GCCGUgaacUCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 5432 | 0.68 | 0.33879 |
Target: 5'- -gGCGCGGauggCGGCGUgggcGAGGUCGGUa -3' miRNA: 3'- cgCGCGUCa---GCCGUGaa--CUCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 13290 | 0.68 | 0.330764 |
Target: 5'- aGCGCcgauuGCAG-C-GCGCc-GGGGCCGGCg -3' miRNA: 3'- -CGCG-----CGUCaGcCGUGaaCUCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 29867 | 0.68 | 0.330764 |
Target: 5'- cCGCGCA----GCGC--GAGGCCGGCa -3' miRNA: 3'- cGCGCGUcagcCGUGaaCUCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 25267 | 0.68 | 0.329969 |
Target: 5'- uCGCGCuGcUCGGuCACUucgucgaaugccuUGAGGUCGuGCg -3' miRNA: 3'- cGCGCGuC-AGCC-GUGA-------------ACUCCGGC-CG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 23289 | 0.68 | 0.326016 |
Target: 5'- uGCGCcacgaaugccuguuuGCGGcCGGCACU---GGCCGGg -3' miRNA: 3'- -CGCG---------------CGUCaGCCGUGAacuCCGGCCg -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 23754 | 0.68 | 0.322878 |
Target: 5'- cGCGUGguGUaacaGGCcg--GGGGCgGGCg -3' miRNA: 3'- -CGCGCguCAg---CCGugaaCUCCGgCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 4800 | 0.68 | 0.322878 |
Target: 5'- aCGC-CGGcUGGCGCUgcggGAuugcuGGCCGGCg -3' miRNA: 3'- cGCGcGUCaGCCGUGAa---CU-----CCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 18665 | 0.68 | 0.315134 |
Target: 5'- cGCgGCGCA-UCGGCcCggUGGcGCCGGCa -3' miRNA: 3'- -CG-CGCGUcAGCCGuGa-ACUcCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 12373 | 0.68 | 0.315134 |
Target: 5'- uGCGCGuCGGUCGGCGagucGAuGCCuGCg -3' miRNA: 3'- -CGCGC-GUCAGCCGUgaa-CUcCGGcCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 14676 | 0.68 | 0.307531 |
Target: 5'- gGUGCgGguGUUGaGCGCUUGAaGCCcGGCc -3' miRNA: 3'- -CGCG-CguCAGC-CGUGAACUcCGG-CCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 30139 | 0.68 | 0.300069 |
Target: 5'- cGC-CGUAGcCGGCACgcuGGGCCaGCa -3' miRNA: 3'- -CGcGCGUCaGCCGUGaacUCCGGcCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 23743 | 0.69 | 0.292747 |
Target: 5'- gGCGCGCAG-CaGCGCcau--GCCGGCg -3' miRNA: 3'- -CGCGCGUCaGcCGUGaacucCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 22060 | 0.69 | 0.292747 |
Target: 5'- cGCGCuugcucgggucGCGGUCGGCGCgc--GGCUcgauGGCg -3' miRNA: 3'- -CGCG-----------CGUCAGCCGUGaacuCCGG----CCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 17643 | 0.69 | 0.285566 |
Target: 5'- cGUGCgGCAGUaCGGCcacgauCUUGAuGGCguCGGCg -3' miRNA: 3'- -CGCG-CGUCA-GCCGu-----GAACU-CCG--GCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 35336 | 0.69 | 0.285566 |
Target: 5'- cGUGCGC-GUgGGCGCgccgUGgguAGGCCgcGGCg -3' miRNA: 3'- -CGCGCGuCAgCCGUGa---AC---UCCGG--CCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 25488 | 0.69 | 0.283439 |
Target: 5'- gGCGCGCucgugcuuggucagGGUCaGGCcCgcgaUGAGGUCGGUu -3' miRNA: 3'- -CGCGCG--------------UCAG-CCGuGa---ACUCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 27718 | 0.69 | 0.278525 |
Target: 5'- cGgGCGCAGggcauggaGGCGCaacUGcAGGCCGGg -3' miRNA: 3'- -CgCGCGUCag------CCGUGa--AC-UCCGGCCg -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 34775 | 0.69 | 0.278525 |
Target: 5'- gGCGCGU-GUaCGGCAag-GA-GCCGGCg -3' miRNA: 3'- -CGCGCGuCA-GCCGUgaaCUcCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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