Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26482 | 5' | -59.5 | NC_005357.1 | + | 27502 | 1.12 | 0.000177 |
Target: 5'- gGCGCGCAGUCGGCACUUGAGGCCGGCc -3' miRNA: 3'- -CGCGCGUCAGCCGUGAACUCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 24554 | 0.8 | 0.04268 |
Target: 5'- uCGCGCAGcgCGGCGauggcGAGGCCGGCc -3' miRNA: 3'- cGCGCGUCa-GCCGUgaa--CUCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 28596 | 0.76 | 0.085896 |
Target: 5'- aGCGUGguGUCGGUcaguucCUugaaccgggcgcggaUGAGGCCGGCc -3' miRNA: 3'- -CGCGCguCAGCCGu-----GA---------------ACUCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 18270 | 0.76 | 0.087366 |
Target: 5'- aGCGCGCAGccgucgaGGCGCU--GGGCCaGGCg -3' miRNA: 3'- -CGCGCGUCag-----CCGUGAacUCCGG-CCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 29598 | 0.76 | 0.093488 |
Target: 5'- gGCGCGCGGUuugcCaguuguccagcgccgGGCGCUUGuGGCCGGg -3' miRNA: 3'- -CGCGCGUCA----G---------------CCGUGAACuCCGGCCg -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 17305 | 0.76 | 0.095081 |
Target: 5'- gGCGCGCAuccauucCGGCAUaUG-GGCCGGCu -3' miRNA: 3'- -CGCGCGUca-----GCCGUGaACuCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 8662 | 0.75 | 0.097794 |
Target: 5'- uCGCGCGGUCGGCAUUgcguGCCGcGCg -3' miRNA: 3'- cGCGCGUCAGCCGUGAacucCGGC-CG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 244 | 0.75 | 0.105781 |
Target: 5'- aGgGCcgGCGGUagcgaauccccaGGCGCUUGAGGCaCGGCg -3' miRNA: 3'- -CgCG--CGUCAg-----------CCGUGAACUCCG-GCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 5241 | 0.75 | 0.109389 |
Target: 5'- uCGCGCAGUucggcCGGCAggUcGGGGUCGGCa -3' miRNA: 3'- cGCGCGUCA-----GCCGUgaA-CUCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 10747 | 0.75 | 0.112483 |
Target: 5'- uGCuGCaGCAGUuacUGGUGCUUGuGGCCGGUg -3' miRNA: 3'- -CG-CG-CGUCA---GCCGUGAACuCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 1463 | 0.74 | 0.115659 |
Target: 5'- -gGCGCGGUCGGCGgcCUccUGgcAGGCCGGg -3' miRNA: 3'- cgCGCGUCAGCCGU--GA--AC--UCCGGCCg -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 2233 | 0.74 | 0.118919 |
Target: 5'- cGCGCaGCAGgCGGCGCgu--GGCCGcGCa -3' miRNA: 3'- -CGCG-CGUCaGCCGUGaacuCCGGC-CG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 9321 | 0.74 | 0.122264 |
Target: 5'- gGCgGCGCAcGUCGGCGCggcGGGCggCGGCa -3' miRNA: 3'- -CG-CGCGU-CAGCCGUGaacUCCG--GCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 34070 | 0.74 | 0.132829 |
Target: 5'- -aGCGCGG-CGGCGCagGAGGUacUGGCa -3' miRNA: 3'- cgCGCGUCaGCCGUGaaCUCCG--GCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 19591 | 0.73 | 0.140334 |
Target: 5'- cGCGCGCuGUCGGCugUcGGcaGCgCGGCg -3' miRNA: 3'- -CGCGCGuCAGCCGugAaCUc-CG-GCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 31895 | 0.73 | 0.15652 |
Target: 5'- uGCGCGUGG-CGGCGgaaagcGuGGCCGGCg -3' miRNA: 3'- -CGCGCGUCaGCCGUgaa---CuCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 19200 | 0.72 | 0.160822 |
Target: 5'- -gGCGCGGUCGGUggccGAGGCCgaGGCc -3' miRNA: 3'- cgCGCGUCAGCCGugaaCUCCGG--CCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 14162 | 0.72 | 0.174375 |
Target: 5'- aGCGCGCGGUCauGGUGCgcaacauggUGAGcCUGGCg -3' miRNA: 3'- -CGCGCGUCAG--CCGUGa--------ACUCcGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 26860 | 0.72 | 0.182499 |
Target: 5'- aGCGCGUcGUcacugaCGGCGCcauugaccuggacgUgGAGGCCGGCa -3' miRNA: 3'- -CGCGCGuCA------GCCGUG--------------AaCUCCGGCCG- -5' |
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26482 | 5' | -59.5 | NC_005357.1 | + | 8423 | 0.72 | 0.183967 |
Target: 5'- cGUGCGCuuGUcuaCGGC-CUUGAGGCUuuGGCc -3' miRNA: 3'- -CGCGCGu-CA---GCCGuGAACUCCGG--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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