miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26485 3' -54.6 NC_005357.1 + 27687 0.66 0.674077
Target:  5'- cGCCaAUGcUGCGCGuACUG-CCUGgGGCu -3'
miRNA:   3'- -CGG-UGC-ACGCGCuUGACcGGAUgUUG- -5'
26485 3' -54.6 NC_005357.1 + 28222 0.67 0.628892
Target:  5'- aGCCGCGcUGCGC---CUGaCCUAUGACa -3'
miRNA:   3'- -CGGUGC-ACGCGcuuGACcGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 28565 0.68 0.517469
Target:  5'- gGCCAuCGcgGCGCGcACgucGGCCaccgGCAGCg -3'
miRNA:   3'- -CGGU-GCa-CGCGCuUGa--CCGGa---UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 28874 0.66 0.662815
Target:  5'- cGCCACGUccucgcugcugGCGUaguuGCUGGCCgucgcCGACc -3'
miRNA:   3'- -CGGUGCA-----------CGCGcu--UGACCGGau---GUUG- -5'
26485 3' -54.6 NC_005357.1 + 29865 0.68 0.550303
Target:  5'- cGCCGCGcaGCGCGA---GGCCgGCAAg -3'
miRNA:   3'- -CGGUGCa-CGCGCUugaCCGGaUGUUg -5'
26485 3' -54.6 NC_005357.1 + 29942 0.69 0.454397
Target:  5'- cGCCACuGUGCGCG-GCUGGUUcuCGAa -3'
miRNA:   3'- -CGGUG-CACGCGCuUGACCGGauGUUg -5'
26485 3' -54.6 NC_005357.1 + 30418 0.71 0.350722
Target:  5'- gGCCACGgccGCGCu-GCUGGCCgACGu- -3'
miRNA:   3'- -CGGUGCa--CGCGcuUGACCGGaUGUug -5'
26485 3' -54.6 NC_005357.1 + 31048 0.72 0.323073
Target:  5'- gGCCaACGUGCGCGAAggcccgaacaucaggGGCCUGguGCc -3'
miRNA:   3'- -CGG-UGCACGCGCUUga-------------CCGGAUguUG- -5'
26485 3' -54.6 NC_005357.1 + 31274 0.68 0.517469
Target:  5'- cGCaACGUGCGCaGGC-GGCCcaGCAGCa -3'
miRNA:   3'- -CGgUGCACGCGcUUGaCCGGa-UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 32641 0.74 0.238317
Target:  5'- uCgGCGUGCGCGAcCUGGCCgcgUGgAACg -3'
miRNA:   3'- cGgUGCACGCGCUuGACCGG---AUgUUG- -5'
26485 3' -54.6 NC_005357.1 + 33230 0.67 0.628892
Target:  5'- cGCCGCGccGC-CGAGCaGGCCaacgucgACGGCg -3'
miRNA:   3'- -CGGUGCa-CGcGCUUGaCCGGa------UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 33853 0.66 0.662815
Target:  5'- gGCCGCacGCGC-----GGCCUACGACg -3'
miRNA:   3'- -CGGUGcaCGCGcuugaCCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 34809 0.66 0.685297
Target:  5'- gGCCACGUguccggcgcuGCGCGAccacguGCUGuccaccgucGCCgACGACu -3'
miRNA:   3'- -CGGUGCA----------CGCGCU------UGAC---------CGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 35569 0.67 0.583749
Target:  5'- uGCCgACGUG-GUGGGg-GGCCUACGAa -3'
miRNA:   3'- -CGG-UGCACgCGCUUgaCCGGAUGUUg -5'
26485 3' -54.6 NC_005357.1 + 35932 0.69 0.47498
Target:  5'- aCUACGgcaagcGCGUGAAUgcgGGCCUGCGcgGCg -3'
miRNA:   3'- cGGUGCa-----CGCGCUUGa--CCGGAUGU--UG- -5'
26485 3' -54.6 NC_005357.1 + 36883 0.7 0.443284
Target:  5'- aGCCAUGcGCGUGAuugaccagaagcuGCcGGCCUGgAACu -3'
miRNA:   3'- -CGGUGCaCGCGCU-------------UGaCCGGAUgUUG- -5'
26485 3' -54.6 NC_005357.1 + 37111 0.76 0.197059
Target:  5'- cGCCACGUGCuCGc---GGCCUACGGCc -3'
miRNA:   3'- -CGGUGCACGcGCuugaCCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 38551 0.66 0.685297
Target:  5'- gGCgACG-GCaGCGc---GGCCUACAGCg -3'
miRNA:   3'- -CGgUGCaCG-CGCuugaCCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 38593 0.68 0.561394
Target:  5'- cGCaaaGUGCGCuGGAUUGGUC-GCAACg -3'
miRNA:   3'- -CGgugCACGCG-CUUGACCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 39492 0.67 0.583749
Target:  5'- uGCCGCGcGaCGCGGugUgGGCCgGCAu- -3'
miRNA:   3'- -CGGUGCaC-GCGCUugA-CCGGaUGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.