Results 61 - 66 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26485 | 3' | -54.6 | NC_005357.1 | + | 5105 | 0.66 | 0.662815 |
Target: 5'- gGCCcaGCGUccgGUGCG-GCUGGCgccguugaaCUGCAACg -3' miRNA: 3'- -CGG--UGCA---CGCGCuUGACCG---------GAUGUUG- -5' |
|||||||
26485 | 3' | -54.6 | NC_005357.1 | + | 4801 | 0.74 | 0.251365 |
Target: 5'- cGCCggcugGCGcUGCGgGAuuGCUGGCCgGCGACa -3' miRNA: 3'- -CGG-----UGC-ACGCgCU--UGACCGGaUGUUG- -5' |
|||||||
26485 | 3' | -54.6 | NC_005357.1 | + | 4044 | 0.66 | 0.685297 |
Target: 5'- gGCCGCG---GCGAGCggcaGGCCaGCGGCc -3' miRNA: 3'- -CGGUGCacgCGCUUGa---CCGGaUGUUG- -5' |
|||||||
26485 | 3' | -54.6 | NC_005357.1 | + | 2575 | 0.69 | 0.484394 |
Target: 5'- gGCCcagcGCGUGCGCGcGCUuGCCgcccuguUGCAACc -3' miRNA: 3'- -CGG----UGCACGCGCuUGAcCGG-------AUGUUG- -5' |
|||||||
26485 | 3' | -54.6 | NC_005357.1 | + | 2348 | 0.72 | 0.333768 |
Target: 5'- gGCgCGCGUGCGcCGcAAUUcGGCCUGCAc- -3' miRNA: 3'- -CG-GUGCACGC-GC-UUGA-CCGGAUGUug -5' |
|||||||
26485 | 3' | -54.6 | NC_005357.1 | + | 608 | 0.68 | 0.53928 |
Target: 5'- cGCCAUGUcgGCGAugaUGGCCU-CAGCc -3' miRNA: 3'- -CGGUGCAcgCGCUug-ACCGGAuGUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home