miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26485 3' -54.6 NC_005357.1 + 35569 0.67 0.583749
Target:  5'- uGCCgACGUG-GUGGGg-GGCCUACGAa -3'
miRNA:   3'- -CGG-UGCACgCGCUUgaCCGGAUGUUg -5'
26485 3' -54.6 NC_005357.1 + 18293 0.67 0.572546
Target:  5'- gGCCAgGcGCGCagccGGCUGGaCUACGACc -3'
miRNA:   3'- -CGGUgCaCGCGc---UUGACCgGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 21269 0.68 0.545885
Target:  5'- gGCCGCGcuguugaaccaggGCGCGGACacggcGGCCaagcuggGCAGCg -3'
miRNA:   3'- -CGGUGCa------------CGCGCUUGa----CCGGa------UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 31274 0.68 0.517469
Target:  5'- cGCaACGUGCGCaGGC-GGCCcaGCAGCa -3'
miRNA:   3'- -CGgUGCACGCGcUUGaCCGGa-UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 33853 0.66 0.662815
Target:  5'- gGCCGCacGCGC-----GGCCUACGACg -3'
miRNA:   3'- -CGGUGcaCGCGcuugaCCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 28222 0.67 0.628892
Target:  5'- aGCCGCGcUGCGC---CUGaCCUAUGACa -3'
miRNA:   3'- -CGGUGC-ACGCGcuuGACcGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 14967 0.68 0.561394
Target:  5'- cGUgGCG-GCGCGcuggcauaccAGCgccagGGCCUGCGGCc -3'
miRNA:   3'- -CGgUGCaCGCGC----------UUGa----CCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 16152 0.69 0.506695
Target:  5'- cGCgCGCGaUGCGCGAGCcgaccaGGCCgGCGGg -3'
miRNA:   3'- -CG-GUGC-ACGCGCUUGa-----CCGGaUGUUg -5'
26485 3' -54.6 NC_005357.1 + 22148 0.67 0.594994
Target:  5'- cGCUACugGUGCGgGcAACgacGGCCaACAGCa -3'
miRNA:   3'- -CGGUG--CACGCgC-UUGa--CCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 7243 0.69 0.506695
Target:  5'- gGCCACuG-GCGCGGGCcgaugucgccGGCCUuguGCAGCu -3'
miRNA:   3'- -CGGUG-CaCGCGCUUGa---------CCGGA---UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 13003 0.68 0.565848
Target:  5'- cGCgACGUGCgagcgcgugggcaacGCGcccaagauucuGCUGGCCUACcGCg -3'
miRNA:   3'- -CGgUGCACG---------------CGCu----------UGACCGGAUGuUG- -5'
26485 3' -54.6 NC_005357.1 + 17071 0.67 0.593868
Target:  5'- uGCC-CGgugGCcggcuauGCGAACUGGCCggccuggACAAUc -3'
miRNA:   3'- -CGGuGCa--CG-------CGCUUGACCGGa------UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 25365 0.68 0.560282
Target:  5'- cGCCuuCGUGCGCGAGgUgaaggauucGGCCaagaaggUGCGGCu -3'
miRNA:   3'- -CGGu-GCACGCGCUUgA---------CCGG-------AUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 29865 0.68 0.550303
Target:  5'- cGCCGCGcaGCGCGA---GGCCgGCAAg -3'
miRNA:   3'- -CGGUGCa-CGCGCUugaCCGGaUGUUg -5'
26485 3' -54.6 NC_005357.1 + 608 0.68 0.53928
Target:  5'- cGCCAUGUcgGCGAugaUGGCCU-CAGCc -3'
miRNA:   3'- -CGGUGCAcgCGCUug-ACCGGAuGUUG- -5'
26485 3' -54.6 NC_005357.1 + 18697 0.68 0.528333
Target:  5'- cGCUGC-UGCGCGccaccgaggcACUGGCCcGCGACc -3'
miRNA:   3'- -CGGUGcACGCGCu---------UGACCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 38551 0.66 0.685297
Target:  5'- gGCgACG-GCaGCGc---GGCCUACAGCg -3'
miRNA:   3'- -CGgUGCaCG-CGCuugaCCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 27687 0.66 0.674077
Target:  5'- cGCCaAUGcUGCGCGuACUG-CCUGgGGCu -3'
miRNA:   3'- -CGG-UGC-ACGCGCuUGACcGGAUgUUG- -5'
26485 3' -54.6 NC_005357.1 + 5105 0.66 0.662815
Target:  5'- gGCCcaGCGUccgGUGCG-GCUGGCgccguugaaCUGCAACg -3'
miRNA:   3'- -CGG--UGCA---CGCGCuUGACCG---------GAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 33230 0.67 0.628892
Target:  5'- cGCCGCGccGC-CGAGCaGGCCaacgucgACGGCg -3'
miRNA:   3'- -CGGUGCa-CGcGCUUGaCCGGa------UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.