Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26485 | 3' | -54.6 | NC_005357.1 | + | 35569 | 0.67 | 0.583749 |
Target: 5'- uGCCgACGUG-GUGGGg-GGCCUACGAa -3' miRNA: 3'- -CGG-UGCACgCGCUUgaCCGGAUGUUg -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 39492 | 0.67 | 0.583749 |
Target: 5'- uGCCGCGcGaCGCGGugUgGGCCgGCAu- -3' miRNA: 3'- -CGGUGCaC-GCGCUugA-CCGGaUGUug -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 18293 | 0.67 | 0.572546 |
Target: 5'- gGCCAgGcGCGCagccGGCUGGaCUACGACc -3' miRNA: 3'- -CGGUgCaCGCGc---UUGACCgGAUGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 13003 | 0.68 | 0.565848 |
Target: 5'- cGCgACGUGCgagcgcgugggcaacGCGcccaagauucuGCUGGCCUACcGCg -3' miRNA: 3'- -CGgUGCACG---------------CGCu----------UGACCGGAUGuUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 23291 | 0.68 | 0.561394 |
Target: 5'- cGCCACGaaugccuguuUGCGgcCGGcACUGGCCgggAUGACg -3' miRNA: 3'- -CGGUGC----------ACGC--GCU-UGACCGGa--UGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 14967 | 0.68 | 0.561394 |
Target: 5'- cGUgGCG-GCGCGcuggcauaccAGCgccagGGCCUGCGGCc -3' miRNA: 3'- -CGgUGCaCGCGC----------UUGa----CCGGAUGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 38593 | 0.68 | 0.561394 |
Target: 5'- cGCaaaGUGCGCuGGAUUGGUC-GCAACg -3' miRNA: 3'- -CGgugCACGCG-CUUGACCGGaUGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 25365 | 0.68 | 0.560282 |
Target: 5'- cGCCuuCGUGCGCGAGgUgaaggauucGGCCaagaaggUGCGGCu -3' miRNA: 3'- -CGGu-GCACGCGCUUgA---------CCGG-------AUGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 29865 | 0.68 | 0.550303 |
Target: 5'- cGCCGCGcaGCGCGA---GGCCgGCAAg -3' miRNA: 3'- -CGGUGCa-CGCGCUugaCCGGaUGUUg -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 21269 | 0.68 | 0.545885 |
Target: 5'- gGCCGCGcuguugaaccaggGCGCGGACacggcGGCCaagcuggGCAGCg -3' miRNA: 3'- -CGGUGCa------------CGCGCUUGa----CCGGa------UGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 19483 | 0.68 | 0.53928 |
Target: 5'- cGCCAgGUGCcgGUGGGCaGGCCgcUGCGAa -3' miRNA: 3'- -CGGUgCACG--CGCUUGaCCGG--AUGUUg -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 608 | 0.68 | 0.53928 |
Target: 5'- cGCCAUGUcgGCGAugaUGGCCU-CAGCc -3' miRNA: 3'- -CGGUGCAcgCGCUug-ACCGGAuGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 18697 | 0.68 | 0.528333 |
Target: 5'- cGCUGC-UGCGCGccaccgaggcACUGGCCcGCGACc -3' miRNA: 3'- -CGGUGcACGCGCu---------UGACCGGaUGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 31274 | 0.68 | 0.517469 |
Target: 5'- cGCaACGUGCGCaGGC-GGCCcaGCAGCa -3' miRNA: 3'- -CGgUGCACGCGcUUGaCCGGa-UGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 21180 | 0.68 | 0.517469 |
Target: 5'- gGCCuGC-UGCGCGGccugcuGCUGGUCUGCGc- -3' miRNA: 3'- -CGG-UGcACGCGCU------UGACCGGAUGUug -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 28565 | 0.68 | 0.517469 |
Target: 5'- gGCCAuCGcgGCGCGcACgucGGCCaccgGCAGCg -3' miRNA: 3'- -CGGU-GCa-CGCGCuUGa--CCGGa---UGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 7243 | 0.69 | 0.506695 |
Target: 5'- gGCCACuG-GCGCGGGCcgaugucgccGGCCUuguGCAGCu -3' miRNA: 3'- -CGGUG-CaCGCGCUUGa---------CCGGA---UGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 16152 | 0.69 | 0.506695 |
Target: 5'- cGCgCGCGaUGCGCGAGCcgaccaGGCCgGCGGg -3' miRNA: 3'- -CG-GUGC-ACGCGCUUGa-----CCGGaUGUUg -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 41966 | 0.69 | 0.496019 |
Target: 5'- aCCGCGacaGCGCccgcaAGCUGGCCgcGCAGCa -3' miRNA: 3'- cGGUGCa--CGCGc----UUGACCGGa-UGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 11584 | 0.69 | 0.496019 |
Target: 5'- uGCCGCccaggGcCGCcGGCUGGCCgccggGCAGCa -3' miRNA: 3'- -CGGUGca---C-GCGcUUGACCGGa----UGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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