miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26486 5' -58.7 NC_005357.1 + 8585 0.66 0.478012
Target:  5'- gGCCGcGCGUGCGGCCuGGUgcUGGa-- -3'
miRNA:   3'- gUGGC-UGCACGUCGG-CCAgcACCagu -5'
26486 5' -58.7 NC_005357.1 + 22974 0.66 0.462032
Target:  5'- -uCCuGCGU-CAGCCGGUCGgauucggcuuucgccUGGUCGg -3'
miRNA:   3'- guGGcUGCAcGUCGGCCAGC---------------ACCAGU- -5'
26486 5' -58.7 NC_005357.1 + 11159 0.66 0.458082
Target:  5'- gGCCGccugcgcacguuGCGUGCgcuGGUCGGcCGUGGUg- -3'
miRNA:   3'- gUGGC------------UGCACG---UCGGCCaGCACCAgu -5'
26486 5' -58.7 NC_005357.1 + 27584 0.67 0.419609
Target:  5'- gCACCGGCa-GCAGgCGGcgccagauggCGUGGUCGu -3'
miRNA:   3'- -GUGGCUGcaCGUCgGCCa---------GCACCAGU- -5'
26486 5' -58.7 NC_005357.1 + 24596 0.67 0.392073
Target:  5'- -uCCGGCGUGUccuuGCCGGg-GUaGGUCAg -3'
miRNA:   3'- guGGCUGCACGu---CGGCCagCA-CCAGU- -5'
26486 5' -58.7 NC_005357.1 + 7264 0.68 0.332573
Target:  5'- uCGCCGGCcuuGUGCAGCuucuCGG-CGgUGGUCGg -3'
miRNA:   3'- -GUGGCUG---CACGUCG----GCCaGC-ACCAGU- -5'
26486 5' -58.7 NC_005357.1 + 21577 0.69 0.316836
Target:  5'- gCGCCGuCGUGCAGUCGGUCa------ -3'
miRNA:   3'- -GUGGCuGCACGUCGGCCAGcaccagu -5'
26486 5' -58.7 NC_005357.1 + 31508 0.7 0.280677
Target:  5'- cCGCCGGCGUGCuGCUGGgccucgcuguguugcCGUGGa-- -3'
miRNA:   3'- -GUGGCUGCACGuCGGCCa--------------GCACCagu -5'
26486 5' -58.7 NC_005357.1 + 21649 0.7 0.273024
Target:  5'- aCAUgGACGUGCAGCCGcG-CGaUGaGUCGa -3'
miRNA:   3'- -GUGgCUGCACGUCGGC-CaGC-AC-CAGU- -5'
26486 5' -58.7 NC_005357.1 + 4401 0.7 0.266213
Target:  5'- gCGCCGggccuugaGCGUGCGGCa-GUCGUaGGUCGu -3'
miRNA:   3'- -GUGGC--------UGCACGUCGgcCAGCA-CCAGU- -5'
26486 5' -58.7 NC_005357.1 + 33114 0.71 0.234207
Target:  5'- gCGCCGACGUGCGccGCCaGGUCGccgaggaaGUCAa -3'
miRNA:   3'- -GUGGCUGCACGU--CGG-CCAGCac------CAGU- -5'
26486 5' -58.7 NC_005357.1 + 21529 0.71 0.222338
Target:  5'- gCAUCGACacguugccgGCAGUCGGUucCGUGGUCGa -3'
miRNA:   3'- -GUGGCUGca-------CGUCGGCCA--GCACCAGU- -5'
26486 5' -58.7 NC_005357.1 + 13864 0.72 0.200134
Target:  5'- gGCCGACGUGCgcgccgcgauGGCCGG-CGgccgcaaGGUCGu -3'
miRNA:   3'- gUGGCUGCACG----------UCGGCCaGCa------CCAGU- -5'
26486 5' -58.7 NC_005357.1 + 6211 0.73 0.170457
Target:  5'- --aCGGCGcGCGGCUccuGGUCGUGGUCu -3'
miRNA:   3'- gugGCUGCaCGUCGG---CCAGCACCAGu -5'
26486 5' -58.7 NC_005357.1 + 26320 1.08 0.000413
Target:  5'- cCACCGACGUGCAGCCGGUCGUGGUCAa -3'
miRNA:   3'- -GUGGCUGCACGUCGGCCAGCACCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.