miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26487 5' -55.1 NC_005357.1 + 31962 0.66 0.667082
Target:  5'- gUGCUgCGCGaCUUCcaGGGCGAcgccaagGGCGc -3'
miRNA:   3'- gACGA-GUGCaGAAG--CCCGCUua-----CCGC- -5'
26487 5' -55.1 NC_005357.1 + 13494 0.66 0.655912
Target:  5'- aUGCcgacCGCGcCUUUGGGCGAGguaaGCGg -3'
miRNA:   3'- gACGa---GUGCaGAAGCCCGCUUac--CGC- -5'
26487 5' -55.1 NC_005357.1 + 14962 0.66 0.64472
Target:  5'- aUGCUCGCGUgaagUCGccGGUcgccaGAAUGGCGu -3'
miRNA:   3'- gACGAGUGCAga--AGC--CCG-----CUUACCGC- -5'
26487 5' -55.1 NC_005357.1 + 18280 0.67 0.611112
Target:  5'- uUGCcggC-CGUCagCGGGCcGGUGGCGa -3'
miRNA:   3'- gACGa--GuGCAGaaGCCCGcUUACCGC- -5'
26487 5' -55.1 NC_005357.1 + 7775 0.68 0.544651
Target:  5'- -gGCUCGCGcCUUCGcccugcgaGGCGAugGGCa -3'
miRNA:   3'- gaCGAGUGCaGAAGC--------CCGCUuaCCGc -5'
26487 5' -55.1 NC_005357.1 + 31090 0.69 0.450112
Target:  5'- gCUGCUCACcUCggugcaggCcGGCGAGUGGUGc -3'
miRNA:   3'- -GACGAGUGcAGaa------GcCCGCUUACCGC- -5'
26487 5' -55.1 NC_005357.1 + 38965 0.7 0.430327
Target:  5'- -cGUUCGCGuUCUUCgGGGCGcgcGGCGu -3'
miRNA:   3'- gaCGAGUGC-AGAAG-CCCGCuuaCCGC- -5'
26487 5' -55.1 NC_005357.1 + 9324 0.7 0.40163
Target:  5'- -gGCgCACGUCggCGcGGCGGGcGGCGg -3'
miRNA:   3'- gaCGaGUGCAGaaGC-CCGCUUaCCGC- -5'
26487 5' -55.1 NC_005357.1 + 5416 0.71 0.383188
Target:  5'- uCUGCgUACGcUCcaCGGcGCGGAUGGCGg -3'
miRNA:   3'- -GACGaGUGC-AGaaGCC-CGCUUACCGC- -5'
26487 5' -55.1 NC_005357.1 + 22065 0.72 0.315238
Target:  5'- uUGCUCGgGUCgcggUCGGcGCGcggcucGAUGGCGu -3'
miRNA:   3'- gACGAGUgCAGa---AGCC-CGC------UUACCGC- -5'
26487 5' -55.1 NC_005357.1 + 26222 1.08 0.000909
Target:  5'- gCUGCUCACGUCUUCGGGCGAAUGGCGc -3'
miRNA:   3'- -GACGAGUGCAGAAGCCCGCUUACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.