miRNA display CGI


Results 61 - 80 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 9224 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 34051 0.67 0.722322
Target:  5'- ---aGCCaGCGCgagGCCGgguuCGAGCCGg -3'
miRNA:   3'- gaaaCGGcCGUGa--UGGUu---GUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 18866 0.67 0.733395
Target:  5'- ---cGCCcGCAcCUGCCGGCGaugucGGCCGa -3'
miRNA:   3'- gaaaCGGcCGU-GAUGGUUGU-----UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 1804 0.67 0.733395
Target:  5'- aUUUGCUGGUACUGuuccaagucCCAcCAguGGCCGa -3'
miRNA:   3'- gAAACGGCCGUGAU---------GGUuGU--UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 12822 0.67 0.68857
Target:  5'- ---cGcCCGGCGCUggacaACUGGCAAaCCGCg -3'
miRNA:   3'- gaaaC-GGCCGUGA-----UGGUUGUUcGGCG- -5'
26488 5' -52.6 NC_005357.1 + 41438 0.67 0.726763
Target:  5'- --gUGaaccaCGGCACcgGCCAggcggccaaguggcuGCAAGCUGCc -3'
miRNA:   3'- gaaACg----GCCGUGa-UGGU---------------UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9176 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9128 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9080 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8744 0.67 0.699897
Target:  5'- ---gGCgCGGCGCUACCGucaACAuggaauuuGCgCGCg -3'
miRNA:   3'- gaaaCG-GCCGUGAUGGU---UGUu-------CG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 8295 0.67 0.699897
Target:  5'- --cUGCCGGgGCagugcaGCCAGCGGuGCgCGCu -3'
miRNA:   3'- gaaACGGCCgUGa-----UGGUUGUU-CG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 19631 0.67 0.699897
Target:  5'- ---aGuCCGGCACcaUGCUGACcGGcCCGCa -3'
miRNA:   3'- gaaaC-GGCCGUG--AUGGUUGuUC-GGCG- -5'
26488 5' -52.6 NC_005357.1 + 13536 0.67 0.68857
Target:  5'- ---gGUCGGCGacgGCCAGCAAcuacGCCaGCa -3'
miRNA:   3'- gaaaCGGCCGUga-UGGUUGUU----CGG-CG- -5'
26488 5' -52.6 NC_005357.1 + 4320 0.67 0.68857
Target:  5'- -cUUGCCGGCGucauCCAguuGCGGGCUGg -3'
miRNA:   3'- gaAACGGCCGUgau-GGU---UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 21235 0.67 0.68857
Target:  5'- ---aGCaacGCGCagACCAgcaGCAGGCCGCg -3'
miRNA:   3'- gaaaCGgc-CGUGa-UGGU---UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 26312 0.67 0.722322
Target:  5'- ---cGUCGGgGCcACCGACGugcAGCCGg -3'
miRNA:   3'- gaaaCGGCCgUGaUGGUUGU---UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 36824 0.68 0.642794
Target:  5'- ---cGCCGugGCUACCAACGAGgCGg -3'
miRNA:   3'- gaaaCGGCcgUGAUGGUUGUUCgGCg -5'
26488 5' -52.6 NC_005357.1 + 608 0.68 0.677184
Target:  5'- --cUGCgGGUcg-GCCAGCAGcGCCGUg -3'
miRNA:   3'- gaaACGgCCGugaUGGUUGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 35342 0.68 0.642794
Target:  5'- ---cGUgGGCGC-GCCGugGguaGGCCGCg -3'
miRNA:   3'- gaaaCGgCCGUGaUGGUugU---UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 1883 0.68 0.654284
Target:  5'- ---gGCCGGCGCUgGCCGGguGGgCGa -3'
miRNA:   3'- gaaaCGGCCGUGA-UGGUUguUCgGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.