miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 41828 0.68 0.654284
Target:  5'- --cUGCUGGC-CgACCcGCAGGCgGCc -3'
miRNA:   3'- gaaACGGCCGuGaUGGuUGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 36908 0.68 0.642794
Target:  5'- --cUGCCGGCcuggaACUACCAGgcacCGAGUuggCGCu -3'
miRNA:   3'- gaaACGGCCG-----UGAUGGUU----GUUCG---GCG- -5'
26488 5' -52.6 NC_005357.1 + 28850 0.68 0.665751
Target:  5'- -cUUGCCGaaGCugUcCCAGC--GCCGCg -3'
miRNA:   3'- gaAACGGC--CGugAuGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 608 0.68 0.677184
Target:  5'- --cUGCgGGUcg-GCCAGCAGcGCCGUg -3'
miRNA:   3'- gaaACGgCCGugaUGGUUGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37510 0.68 0.665751
Target:  5'- ---cGCgGGCaucGCUGCCGACGuuuccaccguGGCCGa -3'
miRNA:   3'- gaaaCGgCCG---UGAUGGUUGU----------UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 33820 0.68 0.665751
Target:  5'- ---gGCCGagaaGCGCaACCAGCuuauccagcaccAGGCCGCa -3'
miRNA:   3'- gaaaCGGC----CGUGaUGGUUG------------UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 36636 0.68 0.665751
Target:  5'- ---cGCUGGCGCUGCCGcgaugGCGGGacaCGa -3'
miRNA:   3'- gaaaCGGCCGUGAUGGU-----UGUUCg--GCg -5'
26488 5' -52.6 NC_005357.1 + 36824 0.68 0.642794
Target:  5'- ---cGCCGugGCUACCAACGAGgCGg -3'
miRNA:   3'- gaaaCGGCcgUGAUGGUUGUUCgGCg -5'
26488 5' -52.6 NC_005357.1 + 2744 0.68 0.631294
Target:  5'- ---gGcCCGGCGCUGCUcgGGCGuGCCGa -3'
miRNA:   3'- gaaaC-GGCCGUGAUGG--UUGUuCGGCg -5'
26488 5' -52.6 NC_005357.1 + 2005 0.68 0.631294
Target:  5'- uCUUgagGCCcaGGCGCUcGCUGGCgAAGUCGCg -3'
miRNA:   3'- -GAAa--CGG--CCGUGA-UGGUUG-UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27499 0.68 0.631294
Target:  5'- --aUGCCGGCG--GCCuc--GGCCGCc -3'
miRNA:   3'- gaaACGGCCGUgaUGGuuguUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 34703 0.68 0.630145
Target:  5'- ---aGCCGGCcgccgagcgugcGCUGCaguucauCGGCAAGCCGg -3'
miRNA:   3'- gaaaCGGCCG------------UGAUG-------GUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 34815 0.68 0.642794
Target:  5'- --gUGuCCGGCGCUGCgCGACcacguGCUGUc -3'
miRNA:   3'- gaaAC-GGCCGUGAUG-GUUGuu---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 20255 0.68 0.654284
Target:  5'- cCUggGUCGGCugUugCuGCuguuGGCCGUc -3'
miRNA:   3'- -GAaaCGGCCGugAugGuUGu---UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 26168 0.68 0.662314
Target:  5'- ---gGCCGcGCGCgagGCCAACGccauccgccauaucGuGCCGCu -3'
miRNA:   3'- gaaaCGGC-CGUGa--UGGUUGU--------------U-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37192 0.68 0.654284
Target:  5'- --cUGCCGGCcgaacugcgcgaACUGCUGgguauccgguuGCAGGCCaGCa -3'
miRNA:   3'- gaaACGGCCG------------UGAUGGU-----------UGUUCGG-CG- -5'
26488 5' -52.6 NC_005357.1 + 1883 0.68 0.654284
Target:  5'- ---gGCCGGCGCUgGCCGGguGGgCGa -3'
miRNA:   3'- gaaaCGGCCGUGA-UGGUUguUCgGCg -5'
26488 5' -52.6 NC_005357.1 + 14719 0.68 0.665751
Target:  5'- --aUGaCCGGCggcgagccGCUGCCGGCGcGCgGCc -3'
miRNA:   3'- gaaAC-GGCCG--------UGAUGGUUGUuCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 26733 0.68 0.665751
Target:  5'- ---aGCCGGgcCACcGCCAGCGcGcCCGCu -3'
miRNA:   3'- gaaaCGGCC--GUGaUGGUUGUuC-GGCG- -5'
26488 5' -52.6 NC_005357.1 + 16387 0.68 0.631294
Target:  5'- --gUGCCGGCAaagcaucggcgUUGCUcgaaguagGACAcGGCCGCg -3'
miRNA:   3'- gaaACGGCCGU-----------GAUGG--------UUGU-UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.