Results 101 - 120 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26488 | 5' | -52.6 | NC_005357.1 | + | 28850 | 0.68 | 0.665751 |
Target: 5'- -cUUGCCGaaGCugUcCCAGC--GCCGCg -3' miRNA: 3'- gaAACGGC--CGugAuGGUUGuuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 16387 | 0.68 | 0.631294 |
Target: 5'- --gUGCCGGCAaagcaucggcgUUGCUcgaaguagGACAcGGCCGCg -3' miRNA: 3'- gaaACGGCCGU-----------GAUGG--------UUGU-UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18762 | 0.68 | 0.631294 |
Target: 5'- uUUUGCCGGCGauuucuuCCAucgucaGCGucgaGGCCGCc -3' miRNA: 3'- gAAACGGCCGUgau----GGU------UGU----UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 2005 | 0.68 | 0.631294 |
Target: 5'- uCUUgagGCCcaGGCGCUcGCUGGCgAAGUCGCg -3' miRNA: 3'- -GAAa--CGG--CCGUGA-UGGUUG-UUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 35342 | 0.68 | 0.642794 |
Target: 5'- ---cGUgGGCGC-GCCGugGguaGGCCGCg -3' miRNA: 3'- gaaaCGgCCGUGaUGGUugU---UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 608 | 0.68 | 0.677184 |
Target: 5'- --cUGCgGGUcg-GCCAGCAGcGCCGUg -3' miRNA: 3'- gaaACGgCCGugaUGGUUGUU-CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 34703 | 0.68 | 0.630145 |
Target: 5'- ---aGCCGGCcgccgagcgugcGCUGCaguucauCGGCAAGCCGg -3' miRNA: 3'- gaaaCGGCCG------------UGAUG-------GUUGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 24646 | 0.68 | 0.676042 |
Target: 5'- --gUGCCGGCGg-GCCAggaugguguugucGCGcccGCCGCg -3' miRNA: 3'- gaaACGGCCGUgaUGGU-------------UGUu--CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27828 | 0.69 | 0.619795 |
Target: 5'- ---aGCCGacGCACUGCUgaaaAGCGgaucGGCCGCc -3' miRNA: 3'- gaaaCGGC--CGUGAUGG----UUGU----UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 26006 | 0.69 | 0.608308 |
Target: 5'- ---cGCCGGCgAUUACCccGC-GGCCGUg -3' miRNA: 3'- gaaaCGGCCG-UGAUGGu-UGuUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 34290 | 0.69 | 0.619795 |
Target: 5'- ---cGCCGacacccGCACgcccacaACCAACGccGGCCGCg -3' miRNA: 3'- gaaaCGGC------CGUGa------UGGUUGU--UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 8456 | 0.69 | 0.585411 |
Target: 5'- --aUGUCGGCGuCgaggugGCCuGCGAuGCCGCa -3' miRNA: 3'- gaaACGGCCGU-Ga-----UGGuUGUU-CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18520 | 0.69 | 0.574021 |
Target: 5'- --aUGCCGGCAUggaaGCC-GCGGGCguggCGCa -3' miRNA: 3'- gaaACGGCCGUGa---UGGuUGUUCG----GCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 37360 | 0.69 | 0.595698 |
Target: 5'- ---gGUCGGCAaUGCCGACAacaucaaugcagcGGUCGCc -3' miRNA: 3'- gaaaCGGCCGUgAUGGUUGU-------------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 1715 | 0.69 | 0.618646 |
Target: 5'- ---gGCCGGCG-UGCCGGCGAGggcguccaaguccUCGCg -3' miRNA: 3'- gaaaCGGCCGUgAUGGUUGUUC-------------GGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23393 | 0.69 | 0.562684 |
Target: 5'- ---cGCCGGCggccGCUACCAggGCua-CCGCa -3' miRNA: 3'- gaaaCGGCCG----UGAUGGU--UGuucGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18036 | 0.69 | 0.609456 |
Target: 5'- -cUUGUCGGCGggcugcuugggggccUUACCGGCGcggggugcgugcugGGCCGCc -3' miRNA: 3'- gaAACGGCCGU---------------GAUGGUUGU--------------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 16670 | 0.69 | 0.619795 |
Target: 5'- -gUUGCCGccgcccagcaGCGCgcCCAGCGugcuGCCGCc -3' miRNA: 3'- gaAACGGC----------CGUGauGGUUGUu---CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 13576 | 0.69 | 0.619795 |
Target: 5'- ---gGCgCGGCGCUGggacagcuUCGGCAaguccGGCCGCa -3' miRNA: 3'- gaaaCG-GCCGUGAU--------GGUUGU-----UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 31235 | 0.69 | 0.608308 |
Target: 5'- ----cCCGGCGCgcgGCCcagcuACGAGCCGg -3' miRNA: 3'- gaaacGGCCGUGa--UGGu----UGUUCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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