miRNA display CGI


Results 121 - 140 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 37120 0.69 0.595698
Target:  5'- ---gGCCGGCGaccuggaaaauauCgacgccgugGCCGACAAcGCCGCg -3'
miRNA:   3'- gaaaCGGCCGU-------------Ga--------UGGUUGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 12285 0.69 0.608308
Target:  5'- -gUUGCUGGCccaGCgUGCCGGCuacGGCgGCg -3'
miRNA:   3'- gaAACGGCCG---UG-AUGGUUGu--UCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 334 0.69 0.608308
Target:  5'- ---gGCUGGCGgUggcgucGCgCAGCAGGCCGUc -3'
miRNA:   3'- gaaaCGGCCGUgA------UG-GUUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 11428 0.69 0.585411
Target:  5'- ---aGCCGGCguGCaggucGCCGAUAAGgCGCg -3'
miRNA:   3'- gaaaCGGCCG--UGa----UGGUUGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 31235 0.69 0.608308
Target:  5'- ----cCCGGCGCgcgGCCcagcuACGAGCCGg -3'
miRNA:   3'- gaaacGGCCGUGa--UGGu----UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 18036 0.69 0.609456
Target:  5'- -cUUGUCGGCGggcugcuugggggccUUACCGGCGcggggugcgugcugGGCCGCc -3'
miRNA:   3'- gaAACGGCCGU---------------GAUGGUUGU--------------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 1715 0.69 0.618646
Target:  5'- ---gGCCGGCG-UGCCGGCGAGggcguccaaguccUCGCg -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGUUC-------------GGCG- -5'
26488 5' -52.6 NC_005357.1 + 31309 0.69 0.619795
Target:  5'- --cUGCUcGCACguuugaACCAAUuGGCCGCa -3'
miRNA:   3'- gaaACGGcCGUGa-----UGGUUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 32075 0.69 0.562684
Target:  5'- --aUGCucauCGGCcCcGCCAACAcGGCCGCg -3'
miRNA:   3'- gaaACG----GCCGuGaUGGUUGU-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 963 0.69 0.562684
Target:  5'- --gUGCCcacGGCAgCUugCAGCcacuuGGCCGCc -3'
miRNA:   3'- gaaACGG---CCGU-GAugGUUGu----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 31740 0.69 0.562684
Target:  5'- ---gGCCGugcGCGCUGCCGuCAAGaCGCa -3'
miRNA:   3'- gaaaCGGC---CGUGAUGGUuGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 37297 0.69 0.596843
Target:  5'- --cUGCgCGGCACguugcaguUCAACGgcgccAGCCGCa -3'
miRNA:   3'- gaaACG-GCCGUGau------GGUUGU-----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 32818 0.7 0.529072
Target:  5'- --cUGCCGGUcggACUAC--ACcAGCCGCa -3'
miRNA:   3'- gaaACGGCCG---UGAUGguUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 25309 0.7 0.529072
Target:  5'- ---gGCCGGCcCUGCCAccggcGCucGUCGCc -3'
miRNA:   3'- gaaaCGGCCGuGAUGGU-----UGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 4040 0.7 0.518028
Target:  5'- ---aGCCGGcCGCggcgAgCGGCAGGCCaGCg -3'
miRNA:   3'- gaaaCGGCC-GUGa---UgGUUGUUCGG-CG- -5'
26488 5' -52.6 NC_005357.1 + 29247 0.7 0.551407
Target:  5'- ---cGCCGGCcaagggcgcccaGCgcgGCCGACAcuGGCCGa -3'
miRNA:   3'- gaaaCGGCCG------------UGa--UGGUUGU--UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 28284 0.7 0.529072
Target:  5'- ---cGCUGGaACgGCCGgaagGCAAGCCGCu -3'
miRNA:   3'- gaaaCGGCCgUGaUGGU----UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16891 0.7 0.5402
Target:  5'- ---gGCUacgggGGCGCUGCCGGCG-GCgGCa -3'
miRNA:   3'- gaaaCGG-----CCGUGAUGGUUGUuCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 8625 0.7 0.546916
Target:  5'- ---gGCCGGUACgcccuucggaaacGCCc-CAGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGa------------UGGuuGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 41911 0.7 0.551407
Target:  5'- ---gGCCGaCAgaACCGccuGCAAGCCGCc -3'
miRNA:   3'- gaaaCGGCcGUgaUGGU---UGUUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.