Results 41 - 60 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26488 | 5' | -52.6 | NC_005357.1 | + | 24203 | 0.72 | 0.442658 |
Target: 5'- ---aGCacguaGGCGCUGCCAaaguccgGCGAGCgGCc -3' miRNA: 3'- gaaaCGg----CCGUGAUGGU-------UGUUCGgCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 14601 | 0.72 | 0.433545 |
Target: 5'- ---gGCCGGCGCcACCG-CGGGCagCGCg -3' miRNA: 3'- gaaaCGGCCGUGaUGGUuGUUCG--GCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 39593 | 0.71 | 0.496227 |
Target: 5'- --gUGCUGGCGCcGCUGcGCGuGGCCGCg -3' miRNA: 3'- gaaACGGCCGUGaUGGU-UGU-UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 28668 | 0.71 | 0.485482 |
Target: 5'- --gUGCCGGCGgcCUcGCCAGCGcGGCgCGCc -3' miRNA: 3'- gaaACGGCCGU--GA-UGGUUGU-UCG-GCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18365 | 0.71 | 0.474849 |
Target: 5'- gUUUGCCGGCGgcgagguuggccUUGCCGAUGGcGCCGg -3' miRNA: 3'- gAAACGGCCGU------------GAUGGUUGUU-CGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 32328 | 0.71 | 0.453942 |
Target: 5'- ---gGCCGGCGuc-CCGACAAccGCCGCc -3' miRNA: 3'- gaaaCGGCCGUgauGGUUGUU--CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 17998 | 0.71 | 0.485482 |
Target: 5'- ---gGCCGcGCGCggcACCGACAaaucgggccGGCUGCg -3' miRNA: 3'- gaaaCGGC-CGUGa--UGGUUGU---------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 30652 | 0.71 | 0.464334 |
Target: 5'- ---gGUCGGCACcauucUGCCGGCAAauccGCUGCa -3' miRNA: 3'- gaaaCGGCCGUG-----AUGGUUGUU----CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 8941 | 0.71 | 0.474849 |
Target: 5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3' miRNA: 3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 36049 | 0.71 | 0.464334 |
Target: 5'- ---gGCCGGCcugcgccugAUUGCCGACGugGGCCGg -3' miRNA: 3'- gaaaCGGCCG---------UGAUGGUUGU--UCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 8988 | 0.71 | 0.474849 |
Target: 5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3' miRNA: 3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 38197 | 0.7 | 0.550283 |
Target: 5'- ---aGCUGGCAgaaaacgUUACgCAagccGCAAGCCGCg -3' miRNA: 3'- gaaaCGGCCGU-------GAUG-GU----UGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 28452 | 0.7 | 0.5402 |
Target: 5'- aUUU-CCGGCACguaCAugAGGCCGUc -3' miRNA: 3'- gAAAcGGCCGUGaugGUugUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 32818 | 0.7 | 0.529072 |
Target: 5'- --cUGCCGGUcggACUAC--ACcAGCCGCa -3' miRNA: 3'- gaaACGGCCG---UGAUGguUGuUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 8808 | 0.7 | 0.525749 |
Target: 5'- ---cGCCGGuCAgUACCGaucugcugggucggGCcAGCCGCa -3' miRNA: 3'- gaaaCGGCC-GUgAUGGU--------------UGuUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 2570 | 0.7 | 0.536853 |
Target: 5'- -aUUGCCGGCuuugaguucagcuuGCaagGCCAGCAGGuuGg -3' miRNA: 3'- gaAACGGCCG--------------UGa--UGGUUGUUCggCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23825 | 0.7 | 0.529072 |
Target: 5'- cCUUUGaagugCGGCACcggcgugACCAGCAGGCagGCg -3' miRNA: 3'- -GAAACg----GCCGUGa------UGGUUGUUCGg-CG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 4260 | 0.7 | 0.516929 |
Target: 5'- --gUGCCGGC-CgucagcGCCGGCAuggugauGGCCGUg -3' miRNA: 3'- gaaACGGCCGuGa-----UGGUUGU-------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 25309 | 0.7 | 0.529072 |
Target: 5'- ---gGCCGGCcCUGCCAccggcGCucGUCGCc -3' miRNA: 3'- gaaaCGGCCGuGAUGGU-----UGuuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 21736 | 0.7 | 0.516929 |
Target: 5'- --aUGCCaccguugGGCGCgGCCGcguccacauaggACAGGCCGCc -3' miRNA: 3'- gaaACGG-------CCGUGaUGGU------------UGUUCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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