miRNA display CGI


Results 61 - 80 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 32818 0.7 0.529072
Target:  5'- --cUGCCGGUcggACUAC--ACcAGCCGCa -3'
miRNA:   3'- gaaACGGCCG---UGAUGguUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 25309 0.7 0.529072
Target:  5'- ---gGCCGGCcCUGCCAccggcGCucGUCGCc -3'
miRNA:   3'- gaaaCGGCCGuGAUGGU-----UGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8808 0.7 0.525749
Target:  5'- ---cGCCGGuCAgUACCGaucugcugggucggGCcAGCCGCa -3'
miRNA:   3'- gaaaCGGCC-GUgAUGGU--------------UGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 41911 0.7 0.551407
Target:  5'- ---gGCCGaCAgaACCGccuGCAAGCCGCc -3'
miRNA:   3'- gaaaCGGCcGUgaUGGU---UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 17208 0.7 0.507078
Target:  5'- ---gGCUGGaacCGC-ACCAACAAGCCGg -3'
miRNA:   3'- gaaaCGGCC---GUGaUGGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 16891 0.7 0.5402
Target:  5'- ---gGCUacgggGGCGCUGCCGGCG-GCgGCa -3'
miRNA:   3'- gaaaCGG-----CCGUGAUGGUUGUuCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 28284 0.7 0.529072
Target:  5'- ---cGCUGGaACgGCCGgaagGCAAGCCGCu -3'
miRNA:   3'- gaaaCGGCCgUGaUGGU----UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21736 0.7 0.516929
Target:  5'- --aUGCCaccguugGGCGCgGCCGcguccacauaggACAGGCCGCc -3'
miRNA:   3'- gaaACGG-------CCGUGaUGGU------------UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23393 0.69 0.562684
Target:  5'- ---cGCCGGCggccGCUACCAggGCua-CCGCa -3'
miRNA:   3'- gaaaCGGCCG----UGAUGGU--UGuucGGCG- -5'
26488 5' -52.6 NC_005357.1 + 1715 0.69 0.618646
Target:  5'- ---gGCCGGCG-UGCCGGCGAGggcguccaaguccUCGCg -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGUUC-------------GGCG- -5'
26488 5' -52.6 NC_005357.1 + 31740 0.69 0.562684
Target:  5'- ---gGCCGugcGCGCUGCCGuCAAGaCGCa -3'
miRNA:   3'- gaaaCGGC---CGUGAUGGUuGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 12285 0.69 0.608308
Target:  5'- -gUUGCUGGCccaGCgUGCCGGCuacGGCgGCg -3'
miRNA:   3'- gaAACGGCCG---UG-AUGGUUGu--UCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 18520 0.69 0.574021
Target:  5'- --aUGCCGGCAUggaaGCC-GCGGGCguggCGCa -3'
miRNA:   3'- gaaACGGCCGUGa---UGGuUGUUCG----GCG- -5'
26488 5' -52.6 NC_005357.1 + 963 0.69 0.562684
Target:  5'- --gUGCCcacGGCAgCUugCAGCcacuuGGCCGCc -3'
miRNA:   3'- gaaACGG---CCGU-GAugGUUGu----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 32075 0.69 0.562684
Target:  5'- --aUGCucauCGGCcCcGCCAACAcGGCCGCg -3'
miRNA:   3'- gaaACG----GCCGuGaUGGUUGU-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 11428 0.69 0.585411
Target:  5'- ---aGCCGGCguGCaggucGCCGAUAAGgCGCg -3'
miRNA:   3'- gaaaCGGCCG--UGa----UGGUUGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 37297 0.69 0.596843
Target:  5'- --cUGCgCGGCACguugcaguUCAACGgcgccAGCCGCa -3'
miRNA:   3'- gaaACG-GCCGUGau------GGUUGU-----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 31235 0.69 0.608308
Target:  5'- ----cCCGGCGCgcgGCCcagcuACGAGCCGg -3'
miRNA:   3'- gaaacGGCCGUGa--UGGu----UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 18036 0.69 0.609456
Target:  5'- -cUUGUCGGCGggcugcuugggggccUUACCGGCGcggggugcgugcugGGCCGCc -3'
miRNA:   3'- gaAACGGCCGU---------------GAUGGUUGU--------------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 334 0.69 0.608308
Target:  5'- ---gGCUGGCGgUggcgucGCgCAGCAGGCCGUc -3'
miRNA:   3'- gaaaCGGCCGUgA------UG-GUUGUUCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.