miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 34290 0.69 0.619795
Target:  5'- ---cGCCGacacccGCACgcccacaACCAACGccGGCCGCg -3'
miRNA:   3'- gaaaCGGC------CGUGa------UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27828 0.69 0.619795
Target:  5'- ---aGCCGacGCACUGCUgaaaAGCGgaucGGCCGCc -3'
miRNA:   3'- gaaaCGGC--CGUGAUGG----UUGU----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16670 0.69 0.619795
Target:  5'- -gUUGCCGccgcccagcaGCGCgcCCAGCGugcuGCCGCc -3'
miRNA:   3'- gaAACGGC----------CGUGauGGUUGUu---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8456 0.69 0.585411
Target:  5'- --aUGUCGGCGuCgaggugGCCuGCGAuGCCGCa -3'
miRNA:   3'- gaaACGGCCGU-Ga-----UGGuUGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37120 0.69 0.595698
Target:  5'- ---gGCCGGCGaccuggaaaauauCgacgccgugGCCGACAAcGCCGCg -3'
miRNA:   3'- gaaaCGGCCGU-------------Ga--------UGGUUGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16797 0.69 0.596843
Target:  5'- ---cGCCGagguggacGCGCUGCUGGCGAccgcGCCGCc -3'
miRNA:   3'- gaaaCGGC--------CGUGAUGGUUGUU----CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16497 0.69 0.608308
Target:  5'- ---aGCgCGGCgacauGCUggGCCAccGCAAGCUGCa -3'
miRNA:   3'- gaaaCG-GCCG-----UGA--UGGU--UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37360 0.69 0.595698
Target:  5'- ---gGUCGGCAaUGCCGACAacaucaaugcagcGGUCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-------------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 31740 0.69 0.562684
Target:  5'- ---gGCCGugcGCGCUGCCGuCAAGaCGCa -3'
miRNA:   3'- gaaaCGGC---CGUGAUGGUuGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 26006 0.69 0.608308
Target:  5'- ---cGCCGGCgAUUACCccGC-GGCCGUg -3'
miRNA:   3'- gaaaCGGCCG-UGAUGGu-UGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 13576 0.69 0.619795
Target:  5'- ---gGCgCGGCGCUGggacagcuUCGGCAaguccGGCCGCa -3'
miRNA:   3'- gaaaCG-GCCGUGAU--------GGUUGU-----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 1715 0.69 0.618646
Target:  5'- ---gGCCGGCG-UGCCGGCGAGggcguccaaguccUCGCg -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGUUC-------------GGCG- -5'
26488 5' -52.6 NC_005357.1 + 34703 0.68 0.630145
Target:  5'- ---aGCCGGCcgccgagcgugcGCUGCaguucauCGGCAAGCCGg -3'
miRNA:   3'- gaaaCGGCCG------------UGAUG-------GUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 26733 0.68 0.665751
Target:  5'- ---aGCCGGgcCACcGCCAGCGcGcCCGCu -3'
miRNA:   3'- gaaaCGGCC--GUGaUGGUUGUuC-GGCG- -5'
26488 5' -52.6 NC_005357.1 + 36636 0.68 0.665751
Target:  5'- ---cGCUGGCGCUGCCGcgaugGCGGGacaCGa -3'
miRNA:   3'- gaaaCGGCCGUGAUGGU-----UGUUCg--GCg -5'
26488 5' -52.6 NC_005357.1 + 28850 0.68 0.665751
Target:  5'- -cUUGCCGaaGCugUcCCAGC--GCCGCg -3'
miRNA:   3'- gaAACGGC--CGugAuGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 24646 0.68 0.676042
Target:  5'- --gUGCCGGCGg-GCCAggaugguguugucGCGcccGCCGCg -3'
miRNA:   3'- gaaACGGCCGUgaUGGU-------------UGUu--CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 730 0.68 0.677184
Target:  5'- ---gGgCGGCuuUGCCGACAAcGCCGg -3'
miRNA:   3'- gaaaCgGCCGugAUGGUUGUU-CGGCg -5'
26488 5' -52.6 NC_005357.1 + 18762 0.68 0.631294
Target:  5'- uUUUGCCGGCGauuucuuCCAucgucaGCGucgaGGCCGCc -3'
miRNA:   3'- gAAACGGCCGUgau----GGU------UGU----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 608 0.68 0.677184
Target:  5'- --cUGCgGGUcg-GCCAGCAGcGCCGUg -3'
miRNA:   3'- gaaACGgCCGugaUGGUUGUU-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.