miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 2570 0.7 0.536853
Target:  5'- -aUUGCCGGCuuugaguucagcuuGCaagGCCAGCAGGuuGg -3'
miRNA:   3'- gaAACGGCCG--------------UGa--UGGUUGUUCggCg -5'
26488 5' -52.6 NC_005357.1 + 16891 0.7 0.5402
Target:  5'- ---gGCUacgggGGCGCUGCCGGCG-GCgGCa -3'
miRNA:   3'- gaaaCGG-----CCGUGAUGGUUGUuCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 28452 0.7 0.5402
Target:  5'- aUUU-CCGGCACguaCAugAGGCCGUc -3'
miRNA:   3'- gAAAcGGCCGUGaugGUugUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8625 0.7 0.546916
Target:  5'- ---gGCCGGUACgcccuucggaaacGCCc-CAGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGa------------UGGuuGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 38197 0.7 0.550283
Target:  5'- ---aGCUGGCAgaaaacgUUACgCAagccGCAAGCCGCg -3'
miRNA:   3'- gaaaCGGCCGU-------GAUG-GU----UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 29247 0.7 0.551407
Target:  5'- ---cGCCGGCcaagggcgcccaGCgcgGCCGACAcuGGCCGa -3'
miRNA:   3'- gaaaCGGCCG------------UGa--UGGUUGU--UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 9908 0.7 0.551407
Target:  5'- ---gGCCGGCAUcACCAGCcugcacGGgCGCg -3'
miRNA:   3'- gaaaCGGCCGUGaUGGUUGu-----UCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 41911 0.7 0.551407
Target:  5'- ---gGCCGaCAgaACCGccuGCAAGCCGCc -3'
miRNA:   3'- gaaaCGGCcGUgaUGGU---UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23393 0.69 0.562684
Target:  5'- ---cGCCGGCggccGCUACCAggGCua-CCGCa -3'
miRNA:   3'- gaaaCGGCCG----UGAUGGU--UGuucGGCG- -5'
26488 5' -52.6 NC_005357.1 + 31740 0.69 0.562684
Target:  5'- ---gGCCGugcGCGCUGCCGuCAAGaCGCa -3'
miRNA:   3'- gaaaCGGC---CGUGAUGGUuGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 32075 0.69 0.562684
Target:  5'- --aUGCucauCGGCcCcGCCAACAcGGCCGCg -3'
miRNA:   3'- gaaACG----GCCGuGaUGGUUGU-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 963 0.69 0.562684
Target:  5'- --gUGCCcacGGCAgCUugCAGCcacuuGGCCGCc -3'
miRNA:   3'- gaaACGG---CCGU-GAugGUUGu----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18520 0.69 0.574021
Target:  5'- --aUGCCGGCAUggaaGCC-GCGGGCguggCGCa -3'
miRNA:   3'- gaaACGGCCGUGa---UGGuUGUUCG----GCG- -5'
26488 5' -52.6 NC_005357.1 + 8456 0.69 0.585411
Target:  5'- --aUGUCGGCGuCgaggugGCCuGCGAuGCCGCa -3'
miRNA:   3'- gaaACGGCCGU-Ga-----UGGuUGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 11428 0.69 0.585411
Target:  5'- ---aGCCGGCguGCaggucGCCGAUAAGgCGCg -3'
miRNA:   3'- gaaaCGGCCG--UGa----UGGUUGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 41379 0.69 0.585411
Target:  5'- ---cGCCGGUucgcggcgacauGCUGCCG-CcGGCCGUg -3'
miRNA:   3'- gaaaCGGCCG------------UGAUGGUuGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37120 0.69 0.595698
Target:  5'- ---gGCCGGCGaccuggaaaauauCgacgccgugGCCGACAAcGCCGCg -3'
miRNA:   3'- gaaaCGGCCGU-------------Ga--------UGGUUGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37360 0.69 0.595698
Target:  5'- ---gGUCGGCAaUGCCGACAacaucaaugcagcGGUCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-------------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37297 0.69 0.596843
Target:  5'- --cUGCgCGGCACguugcaguUCAACGgcgccAGCCGCa -3'
miRNA:   3'- gaaACG-GCCGUGau------GGUUGU-----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16797 0.69 0.596843
Target:  5'- ---cGCCGagguggacGCGCUGCUGGCGAccgcGCCGCc -3'
miRNA:   3'- gaaaCGGC--------CGUGAUGGUUGUU----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.