miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 16497 0.69 0.608308
Target:  5'- ---aGCgCGGCgacauGCUggGCCAccGCAAGCUGCa -3'
miRNA:   3'- gaaaCG-GCCG-----UGA--UGGU--UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 31235 0.69 0.608308
Target:  5'- ----cCCGGCGCgcgGCCcagcuACGAGCCGg -3'
miRNA:   3'- gaaacGGCCGUGa--UGGu----UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 26006 0.69 0.608308
Target:  5'- ---cGCCGGCgAUUACCccGC-GGCCGUg -3'
miRNA:   3'- gaaaCGGCCG-UGAUGGu-UGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 12285 0.69 0.608308
Target:  5'- -gUUGCUGGCccaGCgUGCCGGCuacGGCgGCg -3'
miRNA:   3'- gaAACGGCCG---UG-AUGGUUGu--UCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 334 0.69 0.608308
Target:  5'- ---gGCUGGCGgUggcgucGCgCAGCAGGCCGUc -3'
miRNA:   3'- gaaaCGGCCGUgA------UG-GUUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18036 0.69 0.609456
Target:  5'- -cUUGUCGGCGggcugcuugggggccUUACCGGCGcggggugcgugcugGGCCGCc -3'
miRNA:   3'- gaAACGGCCGU---------------GAUGGUUGU--------------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 1715 0.69 0.618646
Target:  5'- ---gGCCGGCG-UGCCGGCGAGggcguccaaguccUCGCg -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGUUC-------------GGCG- -5'
26488 5' -52.6 NC_005357.1 + 16670 0.69 0.619795
Target:  5'- -gUUGCCGccgcccagcaGCGCgcCCAGCGugcuGCCGCc -3'
miRNA:   3'- gaAACGGC----------CGUGauGGUUGUu---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27828 0.69 0.619795
Target:  5'- ---aGCCGacGCACUGCUgaaaAGCGgaucGGCCGCc -3'
miRNA:   3'- gaaaCGGC--CGUGAUGG----UUGU----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 31309 0.69 0.619795
Target:  5'- --cUGCUcGCACguuugaACCAAUuGGCCGCa -3'
miRNA:   3'- gaaACGGcCGUGa-----UGGUUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 34290 0.69 0.619795
Target:  5'- ---cGCCGacacccGCACgcccacaACCAACGccGGCCGCg -3'
miRNA:   3'- gaaaCGGC------CGUGa------UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 13576 0.69 0.619795
Target:  5'- ---gGCgCGGCGCUGggacagcuUCGGCAaguccGGCCGCa -3'
miRNA:   3'- gaaaCG-GCCGUGAU--------GGUUGU-----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 34703 0.68 0.630145
Target:  5'- ---aGCCGGCcgccgagcgugcGCUGCaguucauCGGCAAGCCGg -3'
miRNA:   3'- gaaaCGGCCG------------UGAUG-------GUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 2744 0.68 0.631294
Target:  5'- ---gGcCCGGCGCUGCUcgGGCGuGCCGa -3'
miRNA:   3'- gaaaC-GGCCGUGAUGG--UUGUuCGGCg -5'
26488 5' -52.6 NC_005357.1 + 16387 0.68 0.631294
Target:  5'- --gUGCCGGCAaagcaucggcgUUGCUcgaaguagGACAcGGCCGCg -3'
miRNA:   3'- gaaACGGCCGU-----------GAUGG--------UUGU-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 2005 0.68 0.631294
Target:  5'- uCUUgagGCCcaGGCGCUcGCUGGCgAAGUCGCg -3'
miRNA:   3'- -GAAa--CGG--CCGUGA-UGGUUG-UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18762 0.68 0.631294
Target:  5'- uUUUGCCGGCGauuucuuCCAucgucaGCGucgaGGCCGCc -3'
miRNA:   3'- gAAACGGCCGUgau----GGU------UGU----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27499 0.68 0.631294
Target:  5'- --aUGCCGGCG--GCCuc--GGCCGCc -3'
miRNA:   3'- gaaACGGCCGUgaUGGuuguUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 24077 0.68 0.635895
Target:  5'- ---cGCCGGCAaacagguggucauccCUAugcCCAcCAAGCUGCg -3'
miRNA:   3'- gaaaCGGCCGU---------------GAU---GGUuGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21366 0.68 0.640495
Target:  5'- ---aGCgGGUACaccugauaggagGCCGACAuGCCGCu -3'
miRNA:   3'- gaaaCGgCCGUGa-----------UGGUUGUuCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.