Results 121 - 140 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26488 | 5' | -52.6 | NC_005357.1 | + | 7707 | 0.68 | 0.677184 |
Target: 5'- ---gGCCGGC-UUGCCGAUGAaCUGCa -3' miRNA: 3'- gaaaCGGCCGuGAUGGUUGUUcGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 7035 | 0.68 | 0.677184 |
Target: 5'- --gUGCCGcCugUugCAGCAGG-CGCa -3' miRNA: 3'- gaaACGGCcGugAugGUUGUUCgGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 608 | 0.68 | 0.677184 |
Target: 5'- --cUGCgGGUcg-GCCAGCAGcGCCGUg -3' miRNA: 3'- gaaACGgCCGugaUGGUUGUU-CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 730 | 0.68 | 0.677184 |
Target: 5'- ---gGgCGGCuuUGCCGACAAcGCCGg -3' miRNA: 3'- gaaaCgGCCGugAUGGUUGUU-CGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 40290 | 0.67 | 0.68857 |
Target: 5'- ---cGgCGGCGCgguugACCGGCu-GCUGCa -3' miRNA: 3'- gaaaCgGCCGUGa----UGGUUGuuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 12822 | 0.67 | 0.68857 |
Target: 5'- ---cGcCCGGCGCUggacaACUGGCAAaCCGCg -3' miRNA: 3'- gaaaC-GGCCGUGA-----UGGUUGUUcGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 4320 | 0.67 | 0.68857 |
Target: 5'- -cUUGCCGGCGucauCCAguuGCGGGCUGg -3' miRNA: 3'- gaAACGGCCGUgau-GGU---UGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 21235 | 0.67 | 0.68857 |
Target: 5'- ---aGCaacGCGCagACCAgcaGCAGGCCGCg -3' miRNA: 3'- gaaaCGgc-CGUGa-UGGU---UGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 13536 | 0.67 | 0.68857 |
Target: 5'- ---gGUCGGCGacgGCCAGCAAcuacGCCaGCa -3' miRNA: 3'- gaaaCGGCCGUga-UGGUUGUU----CGG-CG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 8897 | 0.67 | 0.68857 |
Target: 5'- -aUUGUgaaUGGCGCUAUCGGC-GGCgCGCu -3' miRNA: 3'- gaAACG---GCCGUGAUGGUUGuUCG-GCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 9888 | 0.67 | 0.68857 |
Target: 5'- uCUcgGCCaGGCGCgugGCgAuguCGAGCUGCa -3' miRNA: 3'- -GAaaCGG-CCGUGa--UGgUu--GUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 42199 | 0.67 | 0.68857 |
Target: 5'- ---cGCCGGCcCUA-CAACAuGCgGCa -3' miRNA: 3'- gaaaCGGCCGuGAUgGUUGUuCGgCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 19631 | 0.67 | 0.699897 |
Target: 5'- ---aGuCCGGCACcaUGCUGACcGGcCCGCa -3' miRNA: 3'- gaaaC-GGCCGUG--AUGGUUGuUC-GGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 19477 | 0.67 | 0.699897 |
Target: 5'- ---aGCUuGCGCcaggUGCCGguggGCAGGCCGCu -3' miRNA: 3'- gaaaCGGcCGUG----AUGGU----UGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 37617 | 0.67 | 0.699897 |
Target: 5'- ---cGCCGGCcCcgACCucuACAAGCUGg -3' miRNA: 3'- gaaaCGGCCGuGa-UGGu--UGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 38008 | 0.67 | 0.699897 |
Target: 5'- ---gGCCgGGUACgACCuACGAcuGCCGCa -3' miRNA: 3'- gaaaCGG-CCGUGaUGGuUGUU--CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27423 | 0.67 | 0.699897 |
Target: 5'- ---cGCCuGGCGCaccgcgcCCGGCG-GCCGCa -3' miRNA: 3'- gaaaCGG-CCGUGau-----GGUUGUuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 11583 | 0.67 | 0.699897 |
Target: 5'- --aUGCCGcccaGgGCcGCCGGCuGGCCGCc -3' miRNA: 3'- gaaACGGC----CgUGaUGGUUGuUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 8744 | 0.67 | 0.699897 |
Target: 5'- ---gGCgCGGCGCUACCGucaACAuggaauuuGCgCGCg -3' miRNA: 3'- gaaaCG-GCCGUGAUGGU---UGUu-------CG-GCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 8295 | 0.67 | 0.699897 |
Target: 5'- --cUGCCGGgGCagugcaGCCAGCGGuGCgCGCu -3' miRNA: 3'- gaaACGGCCgUGa-----UGGUUGUU-CG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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