miRNA display CGI


Results 61 - 80 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 8295 0.67 0.699897
Target:  5'- --cUGCCGGgGCagugcaGCCAGCGGuGCgCGCu -3'
miRNA:   3'- gaaACGGCCgUGa-----UGGUUGUU-CG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 8744 0.67 0.699897
Target:  5'- ---gGCgCGGCGCUACCGucaACAuggaauuuGCgCGCg -3'
miRNA:   3'- gaaaCG-GCCGUGAUGGU---UGUu-------CG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 11583 0.67 0.699897
Target:  5'- --aUGCCGcccaGgGCcGCCGGCuGGCCGCc -3'
miRNA:   3'- gaaACGGC----CgUGaUGGUUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27423 0.67 0.699897
Target:  5'- ---cGCCuGGCGCaccgcgcCCGGCG-GCCGCa -3'
miRNA:   3'- gaaaCGG-CCGUGau-----GGUUGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 38008 0.67 0.699897
Target:  5'- ---gGCCgGGUACgACCuACGAcuGCCGCa -3'
miRNA:   3'- gaaaCGG-CCGUGaUGGuUGUU--CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37617 0.67 0.699897
Target:  5'- ---cGCCGGCcCcgACCucuACAAGCUGg -3'
miRNA:   3'- gaaaCGGCCGuGa-UGGu--UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 19477 0.67 0.699897
Target:  5'- ---aGCUuGCGCcaggUGCCGguggGCAGGCCGCu -3'
miRNA:   3'- gaaaCGGcCGUG----AUGGU----UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 19631 0.67 0.699897
Target:  5'- ---aGuCCGGCACcaUGCUGACcGGcCCGCa -3'
miRNA:   3'- gaaaC-GGCCGUG--AUGGUUGuUC-GGCG- -5'
26488 5' -52.6 NC_005357.1 + 13536 0.67 0.68857
Target:  5'- ---gGUCGGCGacgGCCAGCAAcuacGCCaGCa -3'
miRNA:   3'- gaaaCGGCCGUga-UGGUUGUU----CGG-CG- -5'
26488 5' -52.6 NC_005357.1 + 40290 0.67 0.68857
Target:  5'- ---cGgCGGCGCgguugACCGGCu-GCUGCa -3'
miRNA:   3'- gaaaCgGCCGUGa----UGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21235 0.67 0.68857
Target:  5'- ---aGCaacGCGCagACCAgcaGCAGGCCGCg -3'
miRNA:   3'- gaaaCGgc-CGUGa-UGGU---UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 4320 0.67 0.68857
Target:  5'- -cUUGCCGGCGucauCCAguuGCGGGCUGg -3'
miRNA:   3'- gaAACGGCCGUgau-GGU---UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 8897 0.67 0.68857
Target:  5'- -aUUGUgaaUGGCGCUAUCGGC-GGCgCGCu -3'
miRNA:   3'- gaAACG---GCCGUGAUGGUUGuUCG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 12822 0.67 0.68857
Target:  5'- ---cGcCCGGCGCUggacaACUGGCAAaCCGCg -3'
miRNA:   3'- gaaaC-GGCCGUGA-----UGGUUGUUcGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9888 0.67 0.68857
Target:  5'- uCUcgGCCaGGCGCgugGCgAuguCGAGCUGCa -3'
miRNA:   3'- -GAaaCGG-CCGUGa--UGgUu--GUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 42199 0.67 0.68857
Target:  5'- ---cGCCGGCcCUA-CAACAuGCgGCa -3'
miRNA:   3'- gaaaCGGCCGuGAUgGUUGUuCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 7035 0.68 0.677184
Target:  5'- --gUGCCGcCugUugCAGCAGG-CGCa -3'
miRNA:   3'- gaaACGGCcGugAugGUUGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 17870 0.68 0.677184
Target:  5'- ---gGCCGGC-CUcGCCAuc--GCCGCg -3'
miRNA:   3'- gaaaCGGCCGuGA-UGGUuguuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 30206 0.68 0.677184
Target:  5'- -gUUGCCGGUguGCUgcgucccgACCAgggGCAGGCagCGCg -3'
miRNA:   3'- gaAACGGCCG--UGA--------UGGU---UGUUCG--GCG- -5'
26488 5' -52.6 NC_005357.1 + 608 0.68 0.677184
Target:  5'- --cUGCgGGUcg-GCCAGCAGcGCCGUg -3'
miRNA:   3'- gaaACGgCCGugaUGGUUGUU-CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.