Results 81 - 100 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26488 | 5' | -52.6 | NC_005357.1 | + | 17870 | 0.68 | 0.677184 |
Target: 5'- ---gGCCGGC-CUcGCCAuc--GCCGCg -3' miRNA: 3'- gaaaCGGCCGuGA-UGGUuguuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 30206 | 0.68 | 0.677184 |
Target: 5'- -gUUGCCGGUguGCUgcgucccgACCAgggGCAGGCagCGCg -3' miRNA: 3'- gaAACGGCCG--UGA--------UGGU---UGUUCG--GCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 24646 | 0.68 | 0.676042 |
Target: 5'- --gUGCCGGCGg-GCCAggaugguguugucGCGcccGCCGCg -3' miRNA: 3'- gaaACGGCCGUgaUGGU-------------UGUu--CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 37510 | 0.68 | 0.665751 |
Target: 5'- ---cGCgGGCaucGCUGCCGACGuuuccaccguGGCCGa -3' miRNA: 3'- gaaaCGgCCG---UGAUGGUUGU----------UCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 26733 | 0.68 | 0.665751 |
Target: 5'- ---aGCCGGgcCACcGCCAGCGcGcCCGCu -3' miRNA: 3'- gaaaCGGCC--GUGaUGGUUGUuC-GGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 36636 | 0.68 | 0.665751 |
Target: 5'- ---cGCUGGCGCUGCCGcgaugGCGGGacaCGa -3' miRNA: 3'- gaaaCGGCCGUGAUGGU-----UGUUCg--GCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 28850 | 0.68 | 0.665751 |
Target: 5'- -cUUGCCGaaGCugUcCCAGC--GCCGCg -3' miRNA: 3'- gaAACGGC--CGugAuGGUUGuuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 33820 | 0.68 | 0.665751 |
Target: 5'- ---gGCCGagaaGCGCaACCAGCuuauccagcaccAGGCCGCa -3' miRNA: 3'- gaaaCGGC----CGUGaUGGUUG------------UUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 14719 | 0.68 | 0.665751 |
Target: 5'- --aUGaCCGGCggcgagccGCUGCCGGCGcGCgGCc -3' miRNA: 3'- gaaAC-GGCCG--------UGAUGGUUGUuCGgCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 5455 | 0.68 | 0.665751 |
Target: 5'- ---gGUCGGUAUcgACCAuCAcGCCGCg -3' miRNA: 3'- gaaaCGGCCGUGa-UGGUuGUuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 26168 | 0.68 | 0.662314 |
Target: 5'- ---gGCCGcGCGCgagGCCAACGccauccgccauaucGuGCCGCu -3' miRNA: 3'- gaaaCGGC-CGUGa--UGGUUGU--------------U-CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 1883 | 0.68 | 0.654284 |
Target: 5'- ---gGCCGGCGCUgGCCGGguGGgCGa -3' miRNA: 3'- gaaaCGGCCGUGA-UGGUUguUCgGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 37192 | 0.68 | 0.654284 |
Target: 5'- --cUGCCGGCcgaacugcgcgaACUGCUGgguauccgguuGCAGGCCaGCa -3' miRNA: 3'- gaaACGGCCG------------UGAUGGU-----------UGUUCGG-CG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 20255 | 0.68 | 0.654284 |
Target: 5'- cCUggGUCGGCugUugCuGCuguuGGCCGUc -3' miRNA: 3'- -GAaaCGGCCGugAugGuUGu---UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 41828 | 0.68 | 0.654284 |
Target: 5'- --cUGCUGGC-CgACCcGCAGGCgGCc -3' miRNA: 3'- gaaACGGCCGuGaUGGuUGUUCGgCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 36824 | 0.68 | 0.642794 |
Target: 5'- ---cGCCGugGCUACCAACGAGgCGg -3' miRNA: 3'- gaaaCGGCcgUGAUGGUUGUUCgGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 41752 | 0.68 | 0.642794 |
Target: 5'- ---gGCCGGCGCcGCCGua-GGCgGCc -3' miRNA: 3'- gaaaCGGCCGUGaUGGUuguUCGgCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 35342 | 0.68 | 0.642794 |
Target: 5'- ---cGUgGGCGC-GCCGugGguaGGCCGCg -3' miRNA: 3'- gaaaCGgCCGUGaUGGUugU---UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 34815 | 0.68 | 0.642794 |
Target: 5'- --gUGuCCGGCGCUGCgCGACcacguGCUGUc -3' miRNA: 3'- gaaAC-GGCCGUGAUG-GUUGuu---CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 36908 | 0.68 | 0.642794 |
Target: 5'- --cUGCCGGCcuggaACUACCAGgcacCGAGUuggCGCu -3' miRNA: 3'- gaaACGGCCG-----UGAUGGUU----GUUCG---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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