miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 8941 0.71 0.474849
Target:  5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8988 0.71 0.474849
Target:  5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8997 0.74 0.322496
Target:  5'- ---cGCCgcgcgggGGCGCUuCCAGCAGGCgGCg -3'
miRNA:   3'- gaaaCGG-------CCGUGAuGGUUGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 9032 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9080 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9128 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9176 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9224 0.67 0.711152
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9319 0.66 0.765894
Target:  5'- --cUGgCGGCGCacgucgGCgCGGCGGGCgGCg -3'
miRNA:   3'- gaaACgGCCGUGa-----UG-GUUGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 9378 0.67 0.711152
Target:  5'- ---gGCCGcguGCAUUgugcaGCCAcugcaugucgcGCAGGCCGCg -3'
miRNA:   3'- gaaaCGGC---CGUGA-----UGGU-----------UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9520 0.66 0.776444
Target:  5'- ---aGCCGuGCAg-GCCGu--GGCCGCa -3'
miRNA:   3'- gaaaCGGC-CGUgaUGGUuguUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9888 0.67 0.68857
Target:  5'- uCUcgGCCaGGCGCgugGCgAuguCGAGCUGCa -3'
miRNA:   3'- -GAaaCGG-CCGUGa--UGgUu--GUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 9908 0.7 0.551407
Target:  5'- ---gGCCGGCAUcACCAGCcugcacGGgCGCg -3'
miRNA:   3'- gaaaCGGCCGUGaUGGUUGu-----UCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 10355 0.66 0.744356
Target:  5'- --gUGuuGGCGggGCCGAUGAGCaugGCg -3'
miRNA:   3'- gaaACggCCGUgaUGGUUGUUCGg--CG- -5'
26488 5' -52.6 NC_005357.1 + 11415 0.75 0.299242
Target:  5'- cCUcgGCCGGCAa-GCCcgugGACAGGUCGCg -3'
miRNA:   3'- -GAaaCGGCCGUgaUGG----UUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 11428 0.69 0.585411
Target:  5'- ---aGCCGGCguGCaggucGCCGAUAAGgCGCg -3'
miRNA:   3'- gaaaCGGCCG--UGa----UGGUUGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 11516 0.67 0.733395
Target:  5'- ---cGCCuGCGCUGgCGugAGGCCcuGCg -3'
miRNA:   3'- gaaaCGGcCGUGAUgGUugUUCGG--CG- -5'
26488 5' -52.6 NC_005357.1 + 11583 0.67 0.699897
Target:  5'- --aUGCCGcccaGgGCcGCCGGCuGGCCGCc -3'
miRNA:   3'- gaaACGGC----CgUGaUGGUUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 12285 0.69 0.608308
Target:  5'- -gUUGCUGGCccaGCgUGCCGGCuacGGCgGCg -3'
miRNA:   3'- gaAACGGCCG---UG-AUGGUUGu--UCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 12564 0.72 0.403012
Target:  5'- -cUUGCCGGCcucgcGCUGCgCGGCGaugaaauAGCCGUc -3'
miRNA:   3'- gaAACGGCCG-----UGAUG-GUUGU-------UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.