miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 12822 0.67 0.68857
Target:  5'- ---cGcCCGGCGCUggacaACUGGCAAaCCGCg -3'
miRNA:   3'- gaaaC-GGCCGUGA-----UGGUUGUUcGGCG- -5'
26488 5' -52.6 NC_005357.1 + 13040 0.66 0.786831
Target:  5'- --cUGCUGGC-CUACCGcgcCGAGuCCGa -3'
miRNA:   3'- gaaACGGCCGuGAUGGUu--GUUC-GGCg -5'
26488 5' -52.6 NC_005357.1 + 13130 0.66 0.786831
Target:  5'- --gUGCUgGGCAaggGCCAGCAGuucGUCGCc -3'
miRNA:   3'- gaaACGG-CCGUga-UGGUUGUU---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 13536 0.67 0.68857
Target:  5'- ---gGUCGGCGacgGCCAGCAAcuacGCCaGCa -3'
miRNA:   3'- gaaaCGGCCGUga-UGGUUGUU----CGG-CG- -5'
26488 5' -52.6 NC_005357.1 + 13576 0.69 0.619795
Target:  5'- ---gGCgCGGCGCUGggacagcuUCGGCAaguccGGCCGCa -3'
miRNA:   3'- gaaaCG-GCCGUGAU--------GGUUGU-----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 13777 0.66 0.765894
Target:  5'- ---cGCCGGCACcgauCUGGCAcuGCgCGCg -3'
miRNA:   3'- gaaaCGGCCGUGau--GGUUGUu-CG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 13856 0.73 0.394406
Target:  5'- --cUGCCGGUg--GCCGACGugcgcGCCGCg -3'
miRNA:   3'- gaaACGGCCGugaUGGUUGUu----CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 14601 0.72 0.433545
Target:  5'- ---gGCCGGCGCcACCG-CGGGCagCGCg -3'
miRNA:   3'- gaaaCGGCCGUGaUGGUuGUUCG--GCG- -5'
26488 5' -52.6 NC_005357.1 + 14675 0.66 0.776444
Target:  5'- ---aGCCGG-ACgagGgCAGCGAGuuGCg -3'
miRNA:   3'- gaaaCGGCCgUGa--UgGUUGUUCggCG- -5'
26488 5' -52.6 NC_005357.1 + 14719 0.68 0.665751
Target:  5'- --aUGaCCGGCggcgagccGCUGCCGGCGcGCgGCc -3'
miRNA:   3'- gaaAC-GGCCG--------UGAUGGUUGUuCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 14819 0.67 0.733395
Target:  5'- ---cGgCGGCGCUGCCuucgccCAGGUCGa -3'
miRNA:   3'- gaaaCgGCCGUGAUGGuu----GUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 14930 0.66 0.744356
Target:  5'- ---aGCUGGCG--GCCGA--GGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgaUGGUUguUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 14977 0.73 0.357627
Target:  5'- ---cGCUGGCA-UACCAGCGccagggccugcGGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-----------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 15913 0.66 0.755193
Target:  5'- -cUUGCCGcUGCUGCUgaugaaccacacGAUAGGCUGCg -3'
miRNA:   3'- gaAACGGCcGUGAUGG------------UUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16387 0.68 0.631294
Target:  5'- --gUGCCGGCAaagcaucggcgUUGCUcgaaguagGACAcGGCCGCg -3'
miRNA:   3'- gaaACGGCCGU-----------GAUGG--------UUGU-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16497 0.69 0.608308
Target:  5'- ---aGCgCGGCgacauGCUggGCCAccGCAAGCUGCa -3'
miRNA:   3'- gaaaCG-GCCG-----UGA--UGGU--UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16519 0.72 0.433545
Target:  5'- --gUGCCGGUGgUcuggccgauauaGCCGuACAGGCCGCc -3'
miRNA:   3'- gaaACGGCCGUgA------------UGGU-UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16670 0.69 0.619795
Target:  5'- -gUUGCCGccgcccagcaGCGCgcCCAGCGugcuGCCGCc -3'
miRNA:   3'- gaAACGGC----------CGUGauGGUUGUu---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16797 0.69 0.596843
Target:  5'- ---cGCCGagguggacGCGCUGCUGGCGAccgcGCCGCc -3'
miRNA:   3'- gaaaCGGC--------CGUGAUGGUUGUU----CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16891 0.7 0.5402
Target:  5'- ---gGCUacgggGGCGCUGCCGGCG-GCgGCa -3'
miRNA:   3'- gaaaCGG-----CCGUGAUGGUUGUuCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.