miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 16939 0.73 0.394406
Target:  5'- ---gGCaCGGCGCcguCCAGCAGcguGCCGCg -3'
miRNA:   3'- gaaaCG-GCCGUGau-GGUUGUU---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 17208 0.7 0.507078
Target:  5'- ---gGCUGGaacCGC-ACCAACAAGCCGg -3'
miRNA:   3'- gaaaCGGCC---GUGaUGGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 17278 0.66 0.765894
Target:  5'- -aUUGCCGucCACgaaGCCGGC--GCCGCg -3'
miRNA:   3'- gaAACGGCc-GUGa--UGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 17799 0.74 0.340161
Target:  5'- ---cGCCGGCAC-GCCAugugguucgACGuGCCGCu -3'
miRNA:   3'- gaaaCGGCCGUGaUGGU---------UGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 17870 0.68 0.677184
Target:  5'- ---gGCCGGC-CUcGCCAuc--GCCGCg -3'
miRNA:   3'- gaaaCGGCCGuGA-UGGUuguuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 17998 0.71 0.485482
Target:  5'- ---gGCCGcGCGCggcACCGACAaaucgggccGGCUGCg -3'
miRNA:   3'- gaaaCGGC-CGUGa--UGGUUGU---------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18036 0.69 0.609456
Target:  5'- -cUUGUCGGCGggcugcuugggggccUUACCGGCGcggggugcgugcugGGCCGCc -3'
miRNA:   3'- gaAACGGCCGU---------------GAUGGUUGU--------------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18093 0.67 0.733395
Target:  5'- ---aGCCGGCGCgaACCAGgAcGCCuucGCg -3'
miRNA:   3'- gaaaCGGCCGUGa-UGGUUgUuCGG---CG- -5'
26488 5' -52.6 NC_005357.1 + 18161 0.73 0.394406
Target:  5'- --cUGuCCGGCGCcacGCUcaagguGGCAAGCCGCg -3'
miRNA:   3'- gaaAC-GGCCGUGa--UGG------UUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18279 0.72 0.433545
Target:  5'- -cUUGCCGGC-Cgu-CAGCGGGCCGg -3'
miRNA:   3'- gaAACGGCCGuGaugGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 18365 0.71 0.474849
Target:  5'- gUUUGCCGGCGgcgagguuggccUUGCCGAUGGcGCCGg -3'
miRNA:   3'- gAAACGGCCGU------------GAUGGUUGUU-CGGCg -5'
26488 5' -52.6 NC_005357.1 + 18520 0.69 0.574021
Target:  5'- --aUGCCGGCAUggaaGCC-GCGGGCguggCGCa -3'
miRNA:   3'- gaaACGGCCGUGa---UGGuUGUUCG----GCG- -5'
26488 5' -52.6 NC_005357.1 + 18762 0.68 0.631294
Target:  5'- uUUUGCCGGCGauuucuuCCAucgucaGCGucgaGGCCGCc -3'
miRNA:   3'- gAAACGGCCGUgau----GGU------UGU----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18797 0.66 0.790937
Target:  5'- ---cGCCGGCuaccGCgaaACCAACcgcacguuuuaccggGGGCUGCa -3'
miRNA:   3'- gaaaCGGCCG----UGa--UGGUUG---------------UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18866 0.67 0.733395
Target:  5'- ---cGCCcGCAcCUGCCGGCGaugucGGCCGa -3'
miRNA:   3'- gaaaCGGcCGU-GAUGGUUGU-----UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 19421 0.66 0.744356
Target:  5'- ---aGCaGGCGC-AgCAGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGUGaUgGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 19477 0.67 0.699897
Target:  5'- ---aGCUuGCGCcaggUGCCGguggGCAGGCCGCu -3'
miRNA:   3'- gaaaCGGcCGUG----AUGGU----UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 19631 0.67 0.699897
Target:  5'- ---aGuCCGGCACcaUGCUGACcGGcCCGCa -3'
miRNA:   3'- gaaaC-GGCCGUG--AUGGUUGuUC-GGCG- -5'
26488 5' -52.6 NC_005357.1 + 19945 0.67 0.722322
Target:  5'- -cUUGUCGGCcguggacagGCaACCcagguuucgGGCAGGCCGCc -3'
miRNA:   3'- gaAACGGCCG---------UGaUGG---------UUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 20109 0.66 0.776444
Target:  5'- ---cGCguuCGGCACgGCCAGCAGcaucguGCUGCc -3'
miRNA:   3'- gaaaCG---GCCGUGaUGGUUGUU------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.