Results 101 - 120 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26488 | 5' | -52.6 | NC_005357.1 | + | 20178 | 0.73 | 0.348816 |
Target: 5'- ---gGCCGGCgaauacgccaucGCgGCCGACAaccagGGCCGCg -3' miRNA: 3'- gaaaCGGCCG------------UGaUGGUUGU-----UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 20255 | 0.68 | 0.654284 |
Target: 5'- cCUggGUCGGCugUugCuGCuguuGGCCGUc -3' miRNA: 3'- -GAaaCGGCCGugAugGuUGu---UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 21120 | 0.73 | 0.394406 |
Target: 5'- -cUUGCUGGUaucgacGCUGcCCAGCuuGGCCGCc -3' miRNA: 3'- gaAACGGCCG------UGAU-GGUUGu-UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 21154 | 0.66 | 0.786831 |
Target: 5'- gCUggGCCGaCACUuacGCCGACAuGCUGg -3' miRNA: 3'- -GAaaCGGCcGUGA---UGGUUGUuCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 21235 | 0.67 | 0.68857 |
Target: 5'- ---aGCaacGCGCagACCAgcaGCAGGCCGCg -3' miRNA: 3'- gaaaCGgc-CGUGa-UGGU---UGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 21366 | 0.68 | 0.640495 |
Target: 5'- ---aGCgGGUACaccugauaggagGCCGACAuGCCGCu -3' miRNA: 3'- gaaaCGgCCGUGa-----------UGGUUGUuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 21736 | 0.7 | 0.516929 |
Target: 5'- --aUGCCaccguugGGCGCgGCCGcguccacauaggACAGGCCGCc -3' miRNA: 3'- gaaACGG-------CCGUGaUGGU------------UGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 22156 | 0.66 | 0.744356 |
Target: 5'- --gUGCgGGCAacgacgGCCAACAgcagcaacAGCCGa -3' miRNA: 3'- gaaACGgCCGUga----UGGUUGU--------UCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 22226 | 0.75 | 0.294595 |
Target: 5'- ---cGCgGGCGCUGCCAagaccgagggcgacgACAaggcgaAGCCGCa -3' miRNA: 3'- gaaaCGgCCGUGAUGGU---------------UGU------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 22829 | 0.75 | 0.291529 |
Target: 5'- aCUUcGCC-GCGCUGCCGAC-AGCCGa -3' miRNA: 3'- -GAAaCGGcCGUGAUGGUUGuUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23183 | 0.66 | 0.776444 |
Target: 5'- --cUGCUGGUGCgacAgCAGCAGGUCGg -3' miRNA: 3'- gaaACGGCCGUGa--UgGUUGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23311 | 0.77 | 0.216788 |
Target: 5'- ---gGCCGGCACUgGCCGGgAugacgugguAGCCGCg -3' miRNA: 3'- gaaaCGGCCGUGA-UGGUUgU---------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23393 | 0.69 | 0.562684 |
Target: 5'- ---cGCCGGCggccGCUACCAggGCua-CCGCa -3' miRNA: 3'- gaaaCGGCCG----UGAUGGU--UGuucGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23691 | 0.66 | 0.743265 |
Target: 5'- ---gGCCGGaCACguacagGCCGGuagcgccCAGGUCGCg -3' miRNA: 3'- gaaaCGGCC-GUGa-----UGGUU-------GUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23759 | 0.82 | 0.102723 |
Target: 5'- --aUGCCGGCGCcaccggGCCGAUgcGCCGCg -3' miRNA: 3'- gaaACGGCCGUGa-----UGGUUGuuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23825 | 0.7 | 0.529072 |
Target: 5'- cCUUUGaagugCGGCACcggcgugACCAGCAGGCagGCg -3' miRNA: 3'- -GAAACg----GCCGUGa------UGGUUGUUCGg-CG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23966 | 0.66 | 0.776444 |
Target: 5'- ---gGCCGaCGCcGCCGGC--GCCGCg -3' miRNA: 3'- gaaaCGGCcGUGaUGGUUGuuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 24067 | 0.67 | 0.733395 |
Target: 5'- --aUGCCGcGCACagUAgCGGCGA-CCGCg -3' miRNA: 3'- gaaACGGC-CGUG--AUgGUUGUUcGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 24077 | 0.68 | 0.635895 |
Target: 5'- ---cGCCGGCAaacagguggucauccCUAugcCCAcCAAGCUGCg -3' miRNA: 3'- gaaaCGGCCGU---------------GAU---GGUuGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 24203 | 0.72 | 0.442658 |
Target: 5'- ---aGCacguaGGCGCUGCCAaaguccgGCGAGCgGCc -3' miRNA: 3'- gaaaCGg----CCGUGAUGGU-------UGUUCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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