Results 121 - 140 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26488 | 5' | -52.6 | NC_005357.1 | + | 24383 | 0.66 | 0.762699 |
Target: 5'- ---cGCCGGUaaggcccccaagcaGCccGCCGACAAGaacCCGCa -3' miRNA: 3'- gaaaCGGCCG--------------UGa-UGGUUGUUC---GGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 24646 | 0.68 | 0.676042 |
Target: 5'- --gUGCCGGCGg-GCCAggaugguguugucGCGcccGCCGCg -3' miRNA: 3'- gaaACGGCCGUgaUGGU-------------UGUu--CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 25309 | 0.7 | 0.529072 |
Target: 5'- ---gGCCGGCcCUGCCAccggcGCucGUCGCc -3' miRNA: 3'- gaaaCGGCCGuGAUGGU-----UGuuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 25794 | 0.72 | 0.410761 |
Target: 5'- ---gGCCGGCACcugcACCAACAaccucuucaccaacGGCgGCg -3' miRNA: 3'- gaaaCGGCCGUGa---UGGUUGU--------------UCGgCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 26006 | 0.69 | 0.608308 |
Target: 5'- ---cGCCGGCgAUUACCccGC-GGCCGUg -3' miRNA: 3'- gaaaCGGCCG-UGAUGGu-UGuUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 26053 | 1.13 | 0.000643 |
Target: 5'- gCUUUGCCGGCACUACCAACAAGCCGCa -3' miRNA: 3'- -GAAACGGCCGUGAUGGUUGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 26168 | 0.68 | 0.662314 |
Target: 5'- ---gGCCGcGCGCgagGCCAACGccauccgccauaucGuGCCGCu -3' miRNA: 3'- gaaaCGGC-CGUGa--UGGUUGU--------------U-CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 26312 | 0.67 | 0.722322 |
Target: 5'- ---cGUCGGgGCcACCGACGugcAGCCGg -3' miRNA: 3'- gaaaCGGCCgUGaUGGUUGU---UCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 26733 | 0.68 | 0.665751 |
Target: 5'- ---aGCCGGgcCACcGCCAGCGcGcCCGCu -3' miRNA: 3'- gaaaCGGCC--GUGaUGGUUGUuC-GGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27247 | 0.66 | 0.751956 |
Target: 5'- ---aGCCGGCGCcccaggcucuugGCCGagGCAAugaaccgcaguucGCCGCg -3' miRNA: 3'- gaaaCGGCCGUGa-----------UGGU--UGUU-------------CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27423 | 0.67 | 0.699897 |
Target: 5'- ---cGCCuGGCGCaccgcgcCCGGCG-GCCGCa -3' miRNA: 3'- gaaaCGG-CCGUGau-----GGUUGUuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27452 | 0.75 | 0.276573 |
Target: 5'- ---gGCCcuGGCGCUgguauGCCAGCGcGCCGCg -3' miRNA: 3'- gaaaCGG--CCGUGA-----UGGUUGUuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27499 | 0.68 | 0.631294 |
Target: 5'- --aUGCCGGCG--GCCuc--GGCCGCc -3' miRNA: 3'- gaaACGGCCGUgaUGGuuguUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27509 | 0.76 | 0.24851 |
Target: 5'- ---aGUCGGCACUugaggccgGCCAGCAGcagaucGCCGCg -3' miRNA: 3'- gaaaCGGCCGUGA--------UGGUUGUU------CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27828 | 0.69 | 0.619795 |
Target: 5'- ---aGCCGacGCACUGCUgaaaAGCGgaucGGCCGCc -3' miRNA: 3'- gaaaCGGC--CGUGAUGG----UUGU----UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27985 | 0.66 | 0.786831 |
Target: 5'- gCUggGCCaucaGGCugUaGCCGAUGAGgCGCu -3' miRNA: 3'- -GAaaCGG----CCGugA-UGGUUGUUCgGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 28284 | 0.7 | 0.529072 |
Target: 5'- ---cGCUGGaACgGCCGgaagGCAAGCCGCu -3' miRNA: 3'- gaaaCGGCCgUGaUGGU----UGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 28452 | 0.7 | 0.5402 |
Target: 5'- aUUU-CCGGCACguaCAugAGGCCGUc -3' miRNA: 3'- gAAAcGGCCGUGaugGUugUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 28523 | 0.78 | 0.178253 |
Target: 5'- --cUGCCGGCGCUGCUuguugaacGGCAcgaccuugcGGCCGCc -3' miRNA: 3'- gaaACGGCCGUGAUGG--------UUGU---------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 28668 | 0.71 | 0.485482 |
Target: 5'- --gUGCCGGCGgcCUcGCCAGCGcGGCgCGCc -3' miRNA: 3'- gaaACGGCCGU--GA-UGGUUGU-UCG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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