miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 37735 0.67 0.733395
Target:  5'- -cUUGCCGGCcauucucgccgcGCUAuCCGGCGcGCUGg -3'
miRNA:   3'- gaAACGGCCG------------UGAU-GGUUGUuCGGCg -5'
26488 5' -52.6 NC_005357.1 + 37617 0.67 0.699897
Target:  5'- ---cGCCGGCcCcgACCucuACAAGCUGg -3'
miRNA:   3'- gaaaCGGCCGuGa-UGGu--UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 37510 0.68 0.665751
Target:  5'- ---cGCgGGCaucGCUGCCGACGuuuccaccguGGCCGa -3'
miRNA:   3'- gaaaCGgCCG---UGAUGGUUGU----------UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 37360 0.69 0.595698
Target:  5'- ---gGUCGGCAaUGCCGACAacaucaaugcagcGGUCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-------------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37297 0.69 0.596843
Target:  5'- --cUGCgCGGCACguugcaguUCAACGgcgccAGCCGCa -3'
miRNA:   3'- gaaACG-GCCGUGau------GGUUGU-----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37192 0.68 0.654284
Target:  5'- --cUGCCGGCcgaacugcgcgaACUGCUGgguauccgguuGCAGGCCaGCa -3'
miRNA:   3'- gaaACGGCCG------------UGAUGGU-----------UGUUCGG-CG- -5'
26488 5' -52.6 NC_005357.1 + 37120 0.69 0.595698
Target:  5'- ---gGCCGGCGaccuggaaaauauCgacgccgugGCCGACAAcGCCGCg -3'
miRNA:   3'- gaaaCGGCCGU-------------Ga--------UGGUUGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 36908 0.68 0.642794
Target:  5'- --cUGCCGGCcuggaACUACCAGgcacCGAGUuggCGCu -3'
miRNA:   3'- gaaACGGCCG-----UGAUGGUU----GUUCG---GCG- -5'
26488 5' -52.6 NC_005357.1 + 36824 0.68 0.642794
Target:  5'- ---cGCCGugGCUACCAACGAGgCGg -3'
miRNA:   3'- gaaaCGGCcgUGAUGGUUGUUCgGCg -5'
26488 5' -52.6 NC_005357.1 + 36636 0.68 0.665751
Target:  5'- ---cGCUGGCGCUGCCGcgaugGCGGGacaCGa -3'
miRNA:   3'- gaaaCGGCCGUGAUGGU-----UGUUCg--GCg -5'
26488 5' -52.6 NC_005357.1 + 36049 0.71 0.464334
Target:  5'- ---gGCCGGCcugcgccugAUUGCCGACGugGGCCGg -3'
miRNA:   3'- gaaaCGGCCG---------UGAUGGUUGU--UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 35342 0.68 0.642794
Target:  5'- ---cGUgGGCGC-GCCGugGguaGGCCGCg -3'
miRNA:   3'- gaaaCGgCCGUGaUGGUugU---UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 34815 0.68 0.642794
Target:  5'- --gUGuCCGGCGCUGCgCGACcacguGCUGUc -3'
miRNA:   3'- gaaAC-GGCCGUGAUG-GUUGuu---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 34780 0.66 0.775396
Target:  5'- --gUGUaCGGCAaggaGCCGGCGugggucgAGCCGCg -3'
miRNA:   3'- gaaACG-GCCGUga--UGGUUGU-------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 34703 0.68 0.630145
Target:  5'- ---aGCCGGCcgccgagcgugcGCUGCaguucauCGGCAAGCCGg -3'
miRNA:   3'- gaaaCGGCCG------------UGAUG-------GUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 34290 0.69 0.619795
Target:  5'- ---cGCCGacacccGCACgcccacaACCAACGccGGCCGCg -3'
miRNA:   3'- gaaaCGGC------CGUGa------UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 34051 0.67 0.722322
Target:  5'- ---aGCCaGCGCgagGCCGgguuCGAGCCGg -3'
miRNA:   3'- gaaaCGGcCGUGa--UGGUu---GUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 33820 0.68 0.665751
Target:  5'- ---gGCCGagaaGCGCaACCAGCuuauccagcaccAGGCCGCa -3'
miRNA:   3'- gaaaCGGC----CGUGaUGGUUG------------UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 33764 0.66 0.786831
Target:  5'- ---cGCgCGGCACgcaaUGCCGACcgcgcgaugaAGGCCGg -3'
miRNA:   3'- gaaaCG-GCCGUG----AUGGUUG----------UUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 33741 0.66 0.776444
Target:  5'- --cUGCgCGGCGCacaccugggcgGCgCAGC-AGCCGCu -3'
miRNA:   3'- gaaACG-GCCGUGa----------UG-GUUGuUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.