miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 33636 0.72 0.433545
Target:  5'- --cUGaCCGGCGCgGCCGACccaucgugcGCCGCg -3'
miRNA:   3'- gaaAC-GGCCGUGaUGGUUGuu-------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 32818 0.7 0.529072
Target:  5'- --cUGCCGGUcggACUAC--ACcAGCCGCa -3'
miRNA:   3'- gaaACGGCCG---UGAUGguUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 32537 0.78 0.178253
Target:  5'- --aUGCCGGCcaggauGCUGCCGccgGCGAuGCCGCu -3'
miRNA:   3'- gaaACGGCCG------UGAUGGU---UGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 32328 0.71 0.453942
Target:  5'- ---gGCCGGCGuc-CCGACAAccGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgauGGUUGUU--CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 32075 0.69 0.562684
Target:  5'- --aUGCucauCGGCcCcGCCAACAcGGCCGCg -3'
miRNA:   3'- gaaACG----GCCGuGaUGGUUGU-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 31740 0.69 0.562684
Target:  5'- ---gGCCGugcGCGCUGCCGuCAAGaCGCa -3'
miRNA:   3'- gaaaCGGC---CGUGAUGGUuGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 31309 0.69 0.619795
Target:  5'- --cUGCUcGCACguuugaACCAAUuGGCCGCa -3'
miRNA:   3'- gaaACGGcCGUGa-----UGGUUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 31235 0.69 0.608308
Target:  5'- ----cCCGGCGCgcgGCCcagcuACGAGCCGg -3'
miRNA:   3'- gaaacGGCCGUGa--UGGu----UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 30825 0.72 0.403975
Target:  5'- ---cGCUGGCACUgcugcccggcgGCCAGCcGGCgGCc -3'
miRNA:   3'- gaaaCGGCCGUGA-----------UGGUUGuUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 30652 0.71 0.464334
Target:  5'- ---gGUCGGCACcauucUGCCGGCAAauccGCUGCa -3'
miRNA:   3'- gaaaCGGCCGUG-----AUGGUUGUU----CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 30635 0.74 0.310302
Target:  5'- ---aGCCGGCGCgaaugagggcgcagACCAAUucgucGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCGUGa-------------UGGUUG-----UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 30285 0.67 0.722322
Target:  5'- ---cGCCGGaaaACgucggguagcGCCccuGCGAGCCGCu -3'
miRNA:   3'- gaaaCGGCCg--UGa---------UGGu--UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 30206 0.68 0.677184
Target:  5'- -gUUGCCGGUguGCUgcgucccgACCAgggGCAGGCagCGCg -3'
miRNA:   3'- gaAACGGCCG--UGA--------UGGU---UGUUCG--GCG- -5'
26488 5' -52.6 NC_005357.1 + 30145 0.81 0.108976
Target:  5'- ---aGCCGGCACgcuggGCCAGCAAcCCGCc -3'
miRNA:   3'- gaaaCGGCCGUGa----UGGUUGUUcGGCG- -5'
26488 5' -52.6 NC_005357.1 + 29694 0.76 0.24851
Target:  5'- uCUggGCgCGGCACccagcACCAACGGGCCGg -3'
miRNA:   3'- -GAaaCG-GCCGUGa----UGGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 29358 0.67 0.71003
Target:  5'- ---gGCCGaGCGCcaauUCAACAugcagacGGCCGCa -3'
miRNA:   3'- gaaaCGGC-CGUGau--GGUUGU-------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 29247 0.7 0.551407
Target:  5'- ---cGCCGGCcaagggcgcccaGCgcgGCCGACAcuGGCCGa -3'
miRNA:   3'- gaaaCGGCCG------------UGa--UGGUUGU--UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 29133 0.66 0.755193
Target:  5'- ---cGCCGGCc---CCGGCGcGCUGCa -3'
miRNA:   3'- gaaaCGGCCGugauGGUUGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 29120 0.66 0.744356
Target:  5'- --cUGCCGGuCAC-GCgCGcgAGGCCGCa -3'
miRNA:   3'- gaaACGGCC-GUGaUG-GUugUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 28850 0.68 0.665751
Target:  5'- -cUUGCCGaaGCugUcCCAGC--GCCGCg -3'
miRNA:   3'- gaAACGGC--CGugAuGGUUGuuCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.