miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 28668 0.71 0.485482
Target:  5'- --gUGCCGGCGgcCUcGCCAGCGcGGCgCGCc -3'
miRNA:   3'- gaaACGGCCGU--GA-UGGUUGU-UCG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 28523 0.78 0.178253
Target:  5'- --cUGCCGGCGCUGCUuguugaacGGCAcgaccuugcGGCCGCc -3'
miRNA:   3'- gaaACGGCCGUGAUGG--------UUGU---------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 28452 0.7 0.5402
Target:  5'- aUUU-CCGGCACguaCAugAGGCCGUc -3'
miRNA:   3'- gAAAcGGCCGUGaugGUugUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 28284 0.7 0.529072
Target:  5'- ---cGCUGGaACgGCCGgaagGCAAGCCGCu -3'
miRNA:   3'- gaaaCGGCCgUGaUGGU----UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27985 0.66 0.786831
Target:  5'- gCUggGCCaucaGGCugUaGCCGAUGAGgCGCu -3'
miRNA:   3'- -GAaaCGG----CCGugA-UGGUUGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 27828 0.69 0.619795
Target:  5'- ---aGCCGacGCACUGCUgaaaAGCGgaucGGCCGCc -3'
miRNA:   3'- gaaaCGGC--CGUGAUGG----UUGU----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27509 0.76 0.24851
Target:  5'- ---aGUCGGCACUugaggccgGCCAGCAGcagaucGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGA--------UGGUUGUU------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27499 0.68 0.631294
Target:  5'- --aUGCCGGCG--GCCuc--GGCCGCc -3'
miRNA:   3'- gaaACGGCCGUgaUGGuuguUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27452 0.75 0.276573
Target:  5'- ---gGCCcuGGCGCUgguauGCCAGCGcGCCGCg -3'
miRNA:   3'- gaaaCGG--CCGUGA-----UGGUUGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27423 0.67 0.699897
Target:  5'- ---cGCCuGGCGCaccgcgcCCGGCG-GCCGCa -3'
miRNA:   3'- gaaaCGG-CCGUGau-----GGUUGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27247 0.66 0.751956
Target:  5'- ---aGCCGGCGCcccaggcucuugGCCGagGCAAugaaccgcaguucGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGa-----------UGGU--UGUU-------------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 26733 0.68 0.665751
Target:  5'- ---aGCCGGgcCACcGCCAGCGcGcCCGCu -3'
miRNA:   3'- gaaaCGGCC--GUGaUGGUUGUuC-GGCG- -5'
26488 5' -52.6 NC_005357.1 + 26312 0.67 0.722322
Target:  5'- ---cGUCGGgGCcACCGACGugcAGCCGg -3'
miRNA:   3'- gaaaCGGCCgUGaUGGUUGU---UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 26168 0.68 0.662314
Target:  5'- ---gGCCGcGCGCgagGCCAACGccauccgccauaucGuGCCGCu -3'
miRNA:   3'- gaaaCGGC-CGUGa--UGGUUGU--------------U-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 26053 1.13 0.000643
Target:  5'- gCUUUGCCGGCACUACCAACAAGCCGCa -3'
miRNA:   3'- -GAAACGGCCGUGAUGGUUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 26006 0.69 0.608308
Target:  5'- ---cGCCGGCgAUUACCccGC-GGCCGUg -3'
miRNA:   3'- gaaaCGGCCG-UGAUGGu-UGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 25794 0.72 0.410761
Target:  5'- ---gGCCGGCACcugcACCAACAaccucuucaccaacGGCgGCg -3'
miRNA:   3'- gaaaCGGCCGUGa---UGGUUGU--------------UCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 25309 0.7 0.529072
Target:  5'- ---gGCCGGCcCUGCCAccggcGCucGUCGCc -3'
miRNA:   3'- gaaaCGGCCGuGAUGGU-----UGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 24646 0.68 0.676042
Target:  5'- --gUGCCGGCGg-GCCAggaugguguugucGCGcccGCCGCg -3'
miRNA:   3'- gaaACGGCCGUgaUGGU-------------UGUu--CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 24383 0.66 0.762699
Target:  5'- ---cGCCGGUaaggcccccaagcaGCccGCCGACAAGaacCCGCa -3'
miRNA:   3'- gaaaCGGCCG--------------UGa-UGGUUGUUC---GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.