miRNA display CGI


Results 81 - 100 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 24203 0.72 0.442658
Target:  5'- ---aGCacguaGGCGCUGCCAaaguccgGCGAGCgGCc -3'
miRNA:   3'- gaaaCGg----CCGUGAUGGU-------UGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 24077 0.68 0.635895
Target:  5'- ---cGCCGGCAaacagguggucauccCUAugcCCAcCAAGCUGCg -3'
miRNA:   3'- gaaaCGGCCGU---------------GAU---GGUuGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 24067 0.67 0.733395
Target:  5'- --aUGCCGcGCACagUAgCGGCGA-CCGCg -3'
miRNA:   3'- gaaACGGC-CGUG--AUgGUUGUUcGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23966 0.66 0.776444
Target:  5'- ---gGCCGaCGCcGCCGGC--GCCGCg -3'
miRNA:   3'- gaaaCGGCcGUGaUGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23825 0.7 0.529072
Target:  5'- cCUUUGaagugCGGCACcggcgugACCAGCAGGCagGCg -3'
miRNA:   3'- -GAAACg----GCCGUGa------UGGUUGUUCGg-CG- -5'
26488 5' -52.6 NC_005357.1 + 23759 0.82 0.102723
Target:  5'- --aUGCCGGCGCcaccggGCCGAUgcGCCGCg -3'
miRNA:   3'- gaaACGGCCGUGa-----UGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23691 0.66 0.743265
Target:  5'- ---gGCCGGaCACguacagGCCGGuagcgccCAGGUCGCg -3'
miRNA:   3'- gaaaCGGCC-GUGa-----UGGUU-------GUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23393 0.69 0.562684
Target:  5'- ---cGCCGGCggccGCUACCAggGCua-CCGCa -3'
miRNA:   3'- gaaaCGGCCG----UGAUGGU--UGuucGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23311 0.77 0.216788
Target:  5'- ---gGCCGGCACUgGCCGGgAugacgugguAGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGA-UGGUUgU---------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23183 0.66 0.776444
Target:  5'- --cUGCUGGUGCgacAgCAGCAGGUCGg -3'
miRNA:   3'- gaaACGGCCGUGa--UgGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 22829 0.75 0.291529
Target:  5'- aCUUcGCC-GCGCUGCCGAC-AGCCGa -3'
miRNA:   3'- -GAAaCGGcCGUGAUGGUUGuUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 22226 0.75 0.294595
Target:  5'- ---cGCgGGCGCUGCCAagaccgagggcgacgACAaggcgaAGCCGCa -3'
miRNA:   3'- gaaaCGgCCGUGAUGGU---------------UGU------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 22156 0.66 0.744356
Target:  5'- --gUGCgGGCAacgacgGCCAACAgcagcaacAGCCGa -3'
miRNA:   3'- gaaACGgCCGUga----UGGUUGU--------UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 21736 0.7 0.516929
Target:  5'- --aUGCCaccguugGGCGCgGCCGcguccacauaggACAGGCCGCc -3'
miRNA:   3'- gaaACGG-------CCGUGaUGGU------------UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21366 0.68 0.640495
Target:  5'- ---aGCgGGUACaccugauaggagGCCGACAuGCCGCu -3'
miRNA:   3'- gaaaCGgCCGUGa-----------UGGUUGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21235 0.67 0.68857
Target:  5'- ---aGCaacGCGCagACCAgcaGCAGGCCGCg -3'
miRNA:   3'- gaaaCGgc-CGUGa-UGGU---UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21154 0.66 0.786831
Target:  5'- gCUggGCCGaCACUuacGCCGACAuGCUGg -3'
miRNA:   3'- -GAaaCGGCcGUGA---UGGUUGUuCGGCg -5'
26488 5' -52.6 NC_005357.1 + 21120 0.73 0.394406
Target:  5'- -cUUGCUGGUaucgacGCUGcCCAGCuuGGCCGCc -3'
miRNA:   3'- gaAACGGCCG------UGAU-GGUUGu-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 20255 0.68 0.654284
Target:  5'- cCUggGUCGGCugUugCuGCuguuGGCCGUc -3'
miRNA:   3'- -GAaaCGGCCGugAugGuUGu---UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 20178 0.73 0.348816
Target:  5'- ---gGCCGGCgaauacgccaucGCgGCCGACAaccagGGCCGCg -3'
miRNA:   3'- gaaaCGGCCG------------UGaUGGUUGU-----UCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.