Results 101 - 120 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26488 | 5' | -52.6 | NC_005357.1 | + | 20109 | 0.66 | 0.776444 |
Target: 5'- ---cGCguuCGGCACgGCCAGCAGcaucguGCUGCc -3' miRNA: 3'- gaaaCG---GCCGUGaUGGUUGUU------CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 19945 | 0.67 | 0.722322 |
Target: 5'- -cUUGUCGGCcguggacagGCaACCcagguuucgGGCAGGCCGCc -3' miRNA: 3'- gaAACGGCCG---------UGaUGG---------UUGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 19631 | 0.67 | 0.699897 |
Target: 5'- ---aGuCCGGCACcaUGCUGACcGGcCCGCa -3' miRNA: 3'- gaaaC-GGCCGUG--AUGGUUGuUC-GGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 19477 | 0.67 | 0.699897 |
Target: 5'- ---aGCUuGCGCcaggUGCCGguggGCAGGCCGCu -3' miRNA: 3'- gaaaCGGcCGUG----AUGGU----UGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 19421 | 0.66 | 0.744356 |
Target: 5'- ---aGCaGGCGC-AgCAGCAGGCCGa -3' miRNA: 3'- gaaaCGgCCGUGaUgGUUGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18866 | 0.67 | 0.733395 |
Target: 5'- ---cGCCcGCAcCUGCCGGCGaugucGGCCGa -3' miRNA: 3'- gaaaCGGcCGU-GAUGGUUGU-----UCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18797 | 0.66 | 0.790937 |
Target: 5'- ---cGCCGGCuaccGCgaaACCAACcgcacguuuuaccggGGGCUGCa -3' miRNA: 3'- gaaaCGGCCG----UGa--UGGUUG---------------UUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18762 | 0.68 | 0.631294 |
Target: 5'- uUUUGCCGGCGauuucuuCCAucgucaGCGucgaGGCCGCc -3' miRNA: 3'- gAAACGGCCGUgau----GGU------UGU----UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18520 | 0.69 | 0.574021 |
Target: 5'- --aUGCCGGCAUggaaGCC-GCGGGCguggCGCa -3' miRNA: 3'- gaaACGGCCGUGa---UGGuUGUUCG----GCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18365 | 0.71 | 0.474849 |
Target: 5'- gUUUGCCGGCGgcgagguuggccUUGCCGAUGGcGCCGg -3' miRNA: 3'- gAAACGGCCGU------------GAUGGUUGUU-CGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18279 | 0.72 | 0.433545 |
Target: 5'- -cUUGCCGGC-Cgu-CAGCGGGCCGg -3' miRNA: 3'- gaAACGGCCGuGaugGUUGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18161 | 0.73 | 0.394406 |
Target: 5'- --cUGuCCGGCGCcacGCUcaagguGGCAAGCCGCg -3' miRNA: 3'- gaaAC-GGCCGUGa--UGG------UUGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18093 | 0.67 | 0.733395 |
Target: 5'- ---aGCCGGCGCgaACCAGgAcGCCuucGCg -3' miRNA: 3'- gaaaCGGCCGUGa-UGGUUgUuCGG---CG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18036 | 0.69 | 0.609456 |
Target: 5'- -cUUGUCGGCGggcugcuugggggccUUACCGGCGcggggugcgugcugGGCCGCc -3' miRNA: 3'- gaAACGGCCGU---------------GAUGGUUGU--------------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 17998 | 0.71 | 0.485482 |
Target: 5'- ---gGCCGcGCGCggcACCGACAaaucgggccGGCUGCg -3' miRNA: 3'- gaaaCGGC-CGUGa--UGGUUGU---------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 17870 | 0.68 | 0.677184 |
Target: 5'- ---gGCCGGC-CUcGCCAuc--GCCGCg -3' miRNA: 3'- gaaaCGGCCGuGA-UGGUuguuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 17799 | 0.74 | 0.340161 |
Target: 5'- ---cGCCGGCAC-GCCAugugguucgACGuGCCGCu -3' miRNA: 3'- gaaaCGGCCGUGaUGGU---------UGUuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 17278 | 0.66 | 0.765894 |
Target: 5'- -aUUGCCGucCACgaaGCCGGC--GCCGCg -3' miRNA: 3'- gaAACGGCc-GUGa--UGGUUGuuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 17208 | 0.7 | 0.507078 |
Target: 5'- ---gGCUGGaacCGC-ACCAACAAGCCGg -3' miRNA: 3'- gaaaCGGCC---GUGaUGGUUGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 16939 | 0.73 | 0.394406 |
Target: 5'- ---gGCaCGGCGCcguCCAGCAGcguGCCGCg -3' miRNA: 3'- gaaaCG-GCCGUGau-GGUUGUU---CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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