miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 38351 0.77 0.222231
Target:  5'- ---gGCCGGCcugaugGCUACCAAUccccccuGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCG------UGAUGGUUG-------UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23311 0.77 0.216788
Target:  5'- ---gGCCGGCACUgGCCGGgAugacgugguAGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGA-UGGUUgU---------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 28523 0.78 0.178253
Target:  5'- --cUGCCGGCGCUGCUuguugaacGGCAcgaccuugcGGCCGCc -3'
miRNA:   3'- gaaACGGCCGUGAUGG--------UUGU---------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 32537 0.78 0.178253
Target:  5'- --aUGCCGGCcaggauGCUGCCGccgGCGAuGCCGCu -3'
miRNA:   3'- gaaACGGCCG------UGAUGGU---UGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 5074 0.81 0.122567
Target:  5'- -gUUGUCGGCAUUGCCGACc-GCUGCa -3'
miRNA:   3'- gaAACGGCCGUGAUGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21120 0.73 0.394406
Target:  5'- -cUUGCUGGUaucgacGCUGcCCAGCuuGGCCGCc -3'
miRNA:   3'- gaAACGGCCG------UGAU-GGUUGu-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16939 0.73 0.394406
Target:  5'- ---gGCaCGGCGCcguCCAGCAGcguGCCGCg -3'
miRNA:   3'- gaaaCG-GCCGUGau-GGUUGUU---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8808 0.7 0.525749
Target:  5'- ---cGCCGGuCAgUACCGaucugcugggucggGCcAGCCGCa -3'
miRNA:   3'- gaaaCGGCC-GUgAUGGU--------------UGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21736 0.7 0.516929
Target:  5'- --aUGCCaccguugGGCGCgGCCGcguccacauaggACAGGCCGCc -3'
miRNA:   3'- gaaACGG-------CCGUGaUGGU------------UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 4260 0.7 0.516929
Target:  5'- --gUGCCGGC-CgucagcGCCGGCAuggugauGGCCGUg -3'
miRNA:   3'- gaaACGGCCGuGa-----UGGUUGU-------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 39593 0.71 0.496227
Target:  5'- --gUGCUGGCGCcGCUGcGCGuGGCCGCg -3'
miRNA:   3'- gaaACGGCCGUGaUGGU-UGU-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 28668 0.71 0.485482
Target:  5'- --gUGCCGGCGgcCUcGCCAGCGcGGCgCGCc -3'
miRNA:   3'- gaaACGGCCGU--GA-UGGUUGU-UCG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 18365 0.71 0.474849
Target:  5'- gUUUGCCGGCGgcgagguuggccUUGCCGAUGGcGCCGg -3'
miRNA:   3'- gAAACGGCCGU------------GAUGGUUGUU-CGGCg -5'
26488 5' -52.6 NC_005357.1 + 32328 0.71 0.453942
Target:  5'- ---gGCCGGCGuc-CCGACAAccGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgauGGUUGUU--CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 24203 0.72 0.442658
Target:  5'- ---aGCacguaGGCGCUGCCAaaguccgGCGAGCgGCc -3'
miRNA:   3'- gaaaCGg----CCGUGAUGGU-------UGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 18279 0.72 0.433545
Target:  5'- -cUUGCCGGC-Cgu-CAGCGGGCCGg -3'
miRNA:   3'- gaAACGGCCGuGaugGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 16519 0.72 0.433545
Target:  5'- --gUGCCGGUGgUcuggccgauauaGCCGuACAGGCCGCc -3'
miRNA:   3'- gaaACGGCCGUgA------------UGGU-UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 5014 0.72 0.403975
Target:  5'- -aUUGuuGGCAUUACCGACua-CUGCg -3'
miRNA:   3'- gaAACggCCGUGAUGGUUGuucGGCG- -5'
26488 5' -52.6 NC_005357.1 + 39682 0.72 0.403012
Target:  5'- ---gGUCGGCACgcCCGAgcagcgcCGGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGauGGUU-------GUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 12564 0.72 0.403012
Target:  5'- -cUUGCCGGCcucgcGCUGCgCGGCGaugaaauAGCCGUc -3'
miRNA:   3'- gaAACGGCCG-----UGAUG-GUUGU-------UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.