miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 28452 0.7 0.5402
Target:  5'- aUUU-CCGGCACguaCAugAGGCCGUc -3'
miRNA:   3'- gAAAcGGCCGUGaugGUugUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 28668 0.71 0.485482
Target:  5'- --gUGCCGGCGgcCUcGCCAGCGcGGCgCGCc -3'
miRNA:   3'- gaaACGGCCGU--GA-UGGUUGU-UCG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 39593 0.71 0.496227
Target:  5'- --gUGCUGGCGCcGCUGcGCGuGGCCGCg -3'
miRNA:   3'- gaaACGGCCGUGaUGGU-UGU-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 4260 0.7 0.516929
Target:  5'- --gUGCCGGC-CgucagcGCCGGCAuggugauGGCCGUg -3'
miRNA:   3'- gaaACGGCCGuGa-----UGGUUGU-------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21736 0.7 0.516929
Target:  5'- --aUGCCaccguugGGCGCgGCCGcguccacauaggACAGGCCGCc -3'
miRNA:   3'- gaaACGG-------CCGUGaUGGU------------UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8808 0.7 0.525749
Target:  5'- ---cGCCGGuCAgUACCGaucugcugggucggGCcAGCCGCa -3'
miRNA:   3'- gaaaCGGCC-GUgAUGGU--------------UGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 25309 0.7 0.529072
Target:  5'- ---gGCCGGCcCUGCCAccggcGCucGUCGCc -3'
miRNA:   3'- gaaaCGGCCGuGAUGGU-----UGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 32818 0.7 0.529072
Target:  5'- --cUGCCGGUcggACUAC--ACcAGCCGCa -3'
miRNA:   3'- gaaACGGCCG---UGAUGguUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23825 0.7 0.529072
Target:  5'- cCUUUGaagugCGGCACcggcgugACCAGCAGGCagGCg -3'
miRNA:   3'- -GAAACg----GCCGUGa------UGGUUGUUCGg-CG- -5'
26488 5' -52.6 NC_005357.1 + 2570 0.7 0.536853
Target:  5'- -aUUGCCGGCuuugaguucagcuuGCaagGCCAGCAGGuuGg -3'
miRNA:   3'- gaAACGGCCG--------------UGa--UGGUUGUUCggCg -5'
26488 5' -52.6 NC_005357.1 + 20178 0.73 0.348816
Target:  5'- ---gGCCGGCgaauacgccaucGCgGCCGACAaccagGGCCGCg -3'
miRNA:   3'- gaaaCGGCCG------------UGaUGGUUGU-----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 17799 0.74 0.340161
Target:  5'- ---cGCCGGCAC-GCCAugugguucgACGuGCCGCu -3'
miRNA:   3'- gaaaCGGCCGUGaUGGU---------UGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 40059 0.74 0.307111
Target:  5'- ---cGCgGGCGuCUGCCAcguGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGU-GAUGGU---UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 11415 0.75 0.299242
Target:  5'- cCUcgGCCGGCAa-GCCcgugGACAGGUCGCg -3'
miRNA:   3'- -GAaaCGGCCGUgaUGG----UUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 22226 0.75 0.294595
Target:  5'- ---cGCgGGCGCUGCCAagaccgagggcgacgACAaggcgaAGCCGCa -3'
miRNA:   3'- gaaaCGgCCGUGAUGGU---------------UGU------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 29694 0.76 0.24851
Target:  5'- uCUggGCgCGGCACccagcACCAACGGGCCGg -3'
miRNA:   3'- -GAaaCG-GCCGUGa----UGGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 27509 0.76 0.24851
Target:  5'- ---aGUCGGCACUugaggccgGCCAGCAGcagaucGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGA--------UGGUUGUU------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 40959 0.77 0.222843
Target:  5'- ----cCCGGC-CUGCCAGgAGGCCGCc -3'
miRNA:   3'- gaaacGGCCGuGAUGGUUgUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 30145 0.81 0.108976
Target:  5'- ---aGCCGGCACgcuggGCCAGCAAcCCGCc -3'
miRNA:   3'- gaaaCGGCCGUGa----UGGUUGUUcGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18797 0.66 0.790937
Target:  5'- ---cGCCGGCuaccGCgaaACCAACcgcacguuuuaccggGGGCUGCa -3'
miRNA:   3'- gaaaCGGCCG----UGa--UGGUUG---------------UUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.