Results 121 - 140 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26488 | 5' | -52.6 | NC_005357.1 | + | 40059 | 0.74 | 0.307111 |
Target: 5'- ---cGCgGGCGuCUGCCAcguGCAGGCCGa -3' miRNA: 3'- gaaaCGgCCGU-GAUGGU---UGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 11415 | 0.75 | 0.299242 |
Target: 5'- cCUcgGCCGGCAa-GCCcgugGACAGGUCGCg -3' miRNA: 3'- -GAaaCGGCCGUgaUGG----UUGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 22226 | 0.75 | 0.294595 |
Target: 5'- ---cGCgGGCGCUGCCAagaccgagggcgacgACAaggcgaAGCCGCa -3' miRNA: 3'- gaaaCGgCCGUGAUGGU---------------UGU------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 29694 | 0.76 | 0.24851 |
Target: 5'- uCUggGCgCGGCACccagcACCAACGGGCCGg -3' miRNA: 3'- -GAaaCG-GCCGUGa----UGGUUGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27509 | 0.76 | 0.24851 |
Target: 5'- ---aGUCGGCACUugaggccgGCCAGCAGcagaucGCCGCg -3' miRNA: 3'- gaaaCGGCCGUGA--------UGGUUGUU------CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 40959 | 0.77 | 0.222843 |
Target: 5'- ----cCCGGC-CUGCCAGgAGGCCGCc -3' miRNA: 3'- gaaacGGCCGuGAUGGUUgUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 30145 | 0.81 | 0.108976 |
Target: 5'- ---aGCCGGCACgcuggGCCAGCAAcCCGCc -3' miRNA: 3'- gaaaCGGCCGUGa----UGGUUGUUcGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 13856 | 0.73 | 0.394406 |
Target: 5'- --cUGCCGGUg--GCCGACGugcgcGCCGCg -3' miRNA: 3'- gaaACGGCCGugaUGGUUGUu----CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18161 | 0.73 | 0.394406 |
Target: 5'- --cUGuCCGGCGCcacGCUcaagguGGCAAGCCGCg -3' miRNA: 3'- gaaAC-GGCCGUGa--UGG------UUGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 41698 | 0.73 | 0.394406 |
Target: 5'- ---gGCCGGCGUUGUCGGCaAAGCCGCc -3' miRNA: 3'- gaaaCGGCCGUGAUGGUUG-UUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 8988 | 0.71 | 0.474849 |
Target: 5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3' miRNA: 3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 8941 | 0.71 | 0.474849 |
Target: 5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3' miRNA: 3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 36049 | 0.71 | 0.464334 |
Target: 5'- ---gGCCGGCcugcgccugAUUGCCGACGugGGCCGg -3' miRNA: 3'- gaaaCGGCCG---------UGAUGGUUGU--UCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 30652 | 0.71 | 0.464334 |
Target: 5'- ---gGUCGGCACcauucUGCCGGCAAauccGCUGCa -3' miRNA: 3'- gaaaCGGCCGUG-----AUGGUUGUU----CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 38170 | 0.72 | 0.443678 |
Target: 5'- --aUGCCGGCGCUgacgGCCGGCA--CCGa -3' miRNA: 3'- gaaACGGCCGUGA----UGGUUGUucGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 40008 | 0.72 | 0.443678 |
Target: 5'- ---gGCCGGCcuGCUGCCGuacaccuacGCuuGCCGCc -3' miRNA: 3'- gaaaCGGCCG--UGAUGGU---------UGuuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 14601 | 0.72 | 0.433545 |
Target: 5'- ---gGCCGGCGCcACCG-CGGGCagCGCg -3' miRNA: 3'- gaaaCGGCCGUGaUGGUuGUUCG--GCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 33636 | 0.72 | 0.433545 |
Target: 5'- --cUGaCCGGCGCgGCCGACccaucgugcGCCGCg -3' miRNA: 3'- gaaAC-GGCCGUGaUGGUUGuu-------CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 25794 | 0.72 | 0.410761 |
Target: 5'- ---gGCCGGCACcugcACCAACAaccucuucaccaacGGCgGCg -3' miRNA: 3'- gaaaCGGCCGUGa---UGGUUGU--------------UCGgCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 30825 | 0.72 | 0.403975 |
Target: 5'- ---cGCUGGCACUgcugcccggcgGCCAGCcGGCgGCc -3' miRNA: 3'- gaaaCGGCCGUGA-----------UGGUUGuUCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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