miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 31740 0.69 0.562684
Target:  5'- ---gGCCGugcGCGCUGCCGuCAAGaCGCa -3'
miRNA:   3'- gaaaCGGC---CGUGAUGGUuGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 14601 0.72 0.433545
Target:  5'- ---gGCCGGCGCcACCG-CGGGCagCGCg -3'
miRNA:   3'- gaaaCGGCCGUGaUGGUuGUUCG--GCG- -5'
26488 5' -52.6 NC_005357.1 + 40959 0.77 0.222843
Target:  5'- ----cCCGGC-CUGCCAGgAGGCCGCc -3'
miRNA:   3'- gaaacGGCCGuGAUGGUUgUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 41911 0.7 0.551407
Target:  5'- ---gGCCGaCAgaACCGccuGCAAGCCGCc -3'
miRNA:   3'- gaaaCGGCcGUgaUGGU---UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 30145 0.81 0.108976
Target:  5'- ---aGCCGGCACgcuggGCCAGCAAcCCGCc -3'
miRNA:   3'- gaaaCGGCCGUGa----UGGUUGUUcGGCG- -5'
26488 5' -52.6 NC_005357.1 + 26168 0.68 0.662314
Target:  5'- ---gGCCGcGCGCgagGCCAACGccauccgccauaucGuGCCGCu -3'
miRNA:   3'- gaaaCGGC-CGUGa--UGGUUGU--------------U-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 29694 0.76 0.24851
Target:  5'- uCUggGCgCGGCACccagcACCAACGGGCCGg -3'
miRNA:   3'- -GAaaCG-GCCGUGa----UGGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 35342 0.68 0.642794
Target:  5'- ---cGUgGGCGC-GCCGugGguaGGCCGCg -3'
miRNA:   3'- gaaaCGgCCGUGaUGGUugU---UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21366 0.68 0.640495
Target:  5'- ---aGCgGGUACaccugauaggagGCCGACAuGCCGCu -3'
miRNA:   3'- gaaaCGgCCGUGa-----------UGGUUGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 34290 0.69 0.619795
Target:  5'- ---cGCCGacacccGCACgcccacaACCAACGccGGCCGCg -3'
miRNA:   3'- gaaaCGGC------CGUGa------UGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 26006 0.69 0.608308
Target:  5'- ---cGCCGGCgAUUACCccGC-GGCCGUg -3'
miRNA:   3'- gaaaCGGCCG-UGAUGGu-UGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37360 0.69 0.595698
Target:  5'- ---gGUCGGCAaUGCCGACAacaucaaugcagcGGUCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-------------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18520 0.69 0.574021
Target:  5'- --aUGCCGGCAUggaaGCC-GCGGGCguggCGCa -3'
miRNA:   3'- gaaACGGCCGUGa---UGGuUGUUCG----GCG- -5'
26488 5' -52.6 NC_005357.1 + 8625 0.7 0.546916
Target:  5'- ---gGCCGGUACgcccuucggaaacGCCc-CAGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGa------------UGGuuGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 4040 0.7 0.518028
Target:  5'- ---aGCCGGcCGCggcgAgCGGCAGGCCaGCg -3'
miRNA:   3'- gaaaCGGCC-GUGa---UgGUUGUUCGG-CG- -5'
26488 5' -52.6 NC_005357.1 + 8941 0.71 0.474849
Target:  5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 38170 0.72 0.443678
Target:  5'- --aUGCCGGCGCUgacgGCCGGCA--CCGa -3'
miRNA:   3'- gaaACGGCCGUGA----UGGUUGUucGGCg -5'
26488 5' -52.6 NC_005357.1 + 30825 0.72 0.403975
Target:  5'- ---cGCUGGCACUgcugcccggcgGCCAGCcGGCgGCc -3'
miRNA:   3'- gaaaCGGCCGUGA-----------UGGUUGuUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 13856 0.73 0.394406
Target:  5'- --cUGCCGGUg--GCCGACGugcgcGCCGCg -3'
miRNA:   3'- gaaACGGCCGugaUGGUUGUu----CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 40059 0.74 0.307111
Target:  5'- ---cGCgGGCGuCUGCCAcguGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGU-GAUGGU---UGUUCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.